Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR521-2-201ENST00000384818 87 ntBASIC-0.98□□□□□ -2.57
VPS39Q96JC1 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.98□□□□□ -2.57
VPS39Q96JC1 AL445584.3-201ENST00000617173 78 ntBASIC-0.98□□□□□ -2.57
VPS39Q96JC1 AC132825.6-201ENST00000638861 357 ntBASIC-0.98□□□□□ -2.57
VPS39Q96JC1 RNU6-633P-201ENST00000362612 103 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 RNU6-267P-201ENST00000516714 103 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 RNU6-158P-201ENST00000517104 100 ntBASIC-0.99□□□□□ -2.57
VPS39Q96JC1 SNORD114-17-201ENST00000364699 75 ntBASIC-1□□□□□ -2.57
VPS39Q96JC1 SNORD77.2-201ENST00000391045 68 ntBASIC-1□□□□□ -2.57
VPS39Q96JC1 Y_RNA.698-201ENST00000516798 118 ntBASIC-1□□□□□ -2.57
VPS39Q96JC1 AP001318.4-201ENST00000616637 121 ntBASIC-1□□□□□ -2.57
VPS39Q96JC1 RNU6-431P-201ENST00000383874 107 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 SNORD83B-201ENST00000386745 93 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 RNU2-51P-201ENST00000410708 197 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 AL035461.1-201ENST00000421490 332 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 snoU13.19-201ENST00000459148 104 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 MIR6739-201ENST00000622461 75 ntBASIC-1.01□□□□□ -2.57
VPS39Q96JC1 MIR519A2-201ENST00000384990 87 ntBASIC-1.02□□□□□ -2.57
VPS39Q96JC1 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.02□□□□□ -2.57
VPS39Q96JC1 RNA5SP470-201ENST00000516463 106 ntBASIC-1.02□□□□□ -2.57
VPS39Q96JC1 MIR548AX-201ENST00000580117 73 ntBASIC-1.02□□□□□ -2.57
VPS39Q96JC1 MALAT1.1-201ENST00000618249 95 ntBASIC-1.02□□□□□ -2.57
VPS39Q96JC1 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.03□□□□□ -2.57
VPS39Q96JC1 SNORD64-201ENST00000386683 67 ntBASIC-1.03□□□□□ -2.57
VPS39Q96JC1 SCARNA17-201ENST00000516183 144 ntBASIC-1.03□□□□□ -2.57
VPS39Q96JC1 MIR2052-201ENST00000636055 55 ntBASIC-1.03□□□□□ -2.57
VPS39Q96JC1 SNORA63.4-201ENST00000362763 126 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 RNU6-219P-201ENST00000364728 107 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 MIR147A-201ENST00000385079 72 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 RNU6-402P-201ENST00000410678 103 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 AL606753.1-201ENST00000427435 87 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 MIR4499-201ENST00000584834 69 ntBASIC-1.04□□□□□ -2.58
VPS39Q96JC1 SNORD115-37-201ENST00000363768 82 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 MIR488-201ENST00000365739 83 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 RNU6-30P-201ENST00000384561 107 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 AC093729.1-201ENST00000513074 128 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 RNU6-752P-201ENST00000516376 102 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 SNORA40.13-201ENST00000516379 120 ntBASIC-1.05□□□□□ -2.58
VPS39Q96JC1 RNU6-330P-201ENST00000363015 107 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 RNU6-624P-201ENST00000363411 107 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 RNU6-681P-201ENST00000364012 104 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 HAR1A.1-201ENST00000459583 118 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 RNU6-518P-201ENST00000516056 96 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 RNU6-656P-201ENST00000516785 107 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 MIR548AG1-201ENST00000579932 66 ntBASIC-1.06□□□□□ -2.58
VPS39Q96JC1 SNORD116-22-201ENST00000384430 92 ntBASIC-1.07□□□□□ -2.58
VPS39Q96JC1 SCARNA18B-201ENST00000458806 135 ntBASIC-1.07□□□□□ -2.58
VPS39Q96JC1 uc_338.19-201ENST00000616808 99 ntBASIC-1.07□□□□□ -2.58
VPS39Q96JC1 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 SNORD113-1-201ENST00000365321 69 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 AC140658.3-201ENST00000567603 271 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 MIR548BB-201ENST00000626714 66 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 MIR382-201ENST00000637119 76 ntBASIC-1.08□□□□□ -2.58
VPS39Q96JC1 RNU6-497P-201ENST00000365316 104 ntBASIC-1.09□□□□□ -2.58
VPS39Q96JC1 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.09□□□□□ -2.58
VPS39Q96JC1 RNU6-640P-201ENST00000363693 105 ntBASIC-1.1□□□□□ -2.59
VPS39Q96JC1 RNU6-755P-201ENST00000364400 103 ntBASIC-1.1□□□□□ -2.59
VPS39Q96JC1 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.1□□□□□ -2.59
VPS39Q96JC1 RNU7-154P-201ENST00000516194 62 ntBASIC-1.11□□□□□ -2.59
VPS39Q96JC1 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.11□□□□□ -2.59
VPS39Q96JC1 RNU6-147P-201ENST00000383983 107 ntBASIC-1.12□□□□□ -2.59
VPS39Q96JC1 SNORD20-201ENST00000384550 80 ntBASIC-1.12□□□□□ -2.59
VPS39Q96JC1 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.12□□□□□ -2.59
VPS39Q96JC1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.12□□□□□ -2.59
VPS39Q96JC1 RNU6-924P-201ENST00000362926 108 ntBASIC-1.13□□□□□ -2.59
VPS39Q96JC1 RNU6-645P-201ENST00000364649 106 ntBASIC-1.13□□□□□ -2.59
VPS39Q96JC1 U2.7-201ENST00000619197 100 ntBASIC-1.13□□□□□ -2.59
VPS39Q96JC1 RNU6-478P-201ENST00000363904 110 ntBASIC-1.14□□□□□ -2.59
VPS39Q96JC1 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.14□□□□□ -2.59
VPS39Q96JC1 MIR378F-201ENST00000578143 78 ntBASIC-1.14□□□□□ -2.59
VPS39Q96JC1 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.15□□□□□ -2.59
VPS39Q96JC1 AL021921.1-201ENST00000442774 93 ntBASIC-1.15□□□□□ -2.59
VPS39Q96JC1 SNORD63.1-201ENST00000516178 80 ntBASIC-1.15□□□□□ -2.59
VPS39Q96JC1 RNA5SP67-201ENST00000516422 131 ntBASIC-1.15□□□□□ -2.59
VPS39Q96JC1 RNU6-215P-201ENST00000365169 102 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 RNU6-32P-201ENST00000383948 107 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 RNU6-13P-201ENST00000384248 107 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 RNU6-12P-201ENST00000384604 107 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 RNU6-41P-201ENST00000384741 107 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 MIR548C-201ENST00000384815 97 ntBASIC-1.16□□□□□ -2.6
VPS39Q96JC1 SNORD115-22-201ENST00000364456 82 ntBASIC-1.17□□□□□ -2.6
VPS39Q96JC1 MIR3675-201ENST00000583661 73 ntBASIC-1.17□□□□□ -2.6
VPS39Q96JC1 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.17□□□□□ -2.6
VPS39Q96JC1 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 RNU7-88P-201ENST00000458752 63 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 RNU6-982P-201ENST00000516216 102 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 RNU6-557P-201ENST00000516842 110 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 RNU6-303P-201ENST00000517091 106 ntBASIC-1.18□□□□□ -2.6
VPS39Q96JC1 RNU6-686P-201ENST00000364839 107 ntBASIC-1.19□□□□□ -2.6
VPS39Q96JC1 AL603908.1-201ENST00000406098 201 ntBASIC-1.19□□□□□ -2.6
VPS39Q96JC1 MIR4484-201ENST00000582855 83 ntBASIC-1.19□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms