Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 MIR519C-201ENST00000385053 87 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.65□□□□□ -2.51
LHX1P48742 Z95118.1-201ENST00000421372 247 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 AL450471.1-201ENST00000447509 127 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 RNU7-134P-201ENST00000458997 64 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 RNU7-154P-201ENST00000516194 62 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 RNU6-656P-201ENST00000516785 107 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 AC140658.3-201ENST00000567603 271 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 MIR4636-201ENST00000582271 80 ntBASIC-0.65□□□□□ -2.51
LHX1P48742 RNU6-497P-201ENST00000365316 104 ntBASIC-0.66□□□□□ -2.52
LHX1P48742 SNORA26.4-201ENST00000391188 123 ntBASIC-0.66□□□□□ -2.52
LHX1P48742 AL031737.1-201ENST00000450125 223 ntBASIC-0.66□□□□□ -2.52
LHX1P48742 MIR4493-201ENST00000584016 73 ntBASIC-0.66□□□□□ -2.52
LHX1P48742 AC108676.2-201ENST00000605225 163 ntBASIC-0.66□□□□□ -2.52
LHX1P48742 MIR450A1-201ENST00000362262 91 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNU6-246P-201ENST00000384702 107 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNU2-51P-201ENST00000410708 197 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNU4-63P-201ENST00000411313 118 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 AL035461.1-201ENST00000421490 332 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNU6-518P-201ENST00000516056 96 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNU6-752P-201ENST00000516376 102 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 AP002795.1-201ENST00000534879 84 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 MIR2052-201ENST00000636055 55 ntBASIC-0.67□□□□□ -2.52
LHX1P48742 RNA5SP26-201ENST00000362406 119 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 RNU6-924P-201ENST00000362926 108 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 RNU6-624P-201ENST00000363411 107 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 SNORD115-33-201ENST00000363723 82 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 MIR29B1-201ENST00000385015 81 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 RNY4P18-201ENST00000391107 89 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 RNY1P9-201ENST00000532431 109 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 U2.7-201ENST00000619197 100 ntBASIC-0.68□□□□□ -2.52
LHX1P48742 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.68□□□□□ -2.52
LHX1P48742 RNU6-633P-201ENST00000362612 103 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 MT-TQ-201ENST00000387372 72 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 SNORD19-201ENST00000391191 68 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 MIR378F-201ENST00000578143 78 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 MIR4668-201ENST00000582284 70 ntBASIC-0.69□□□□□ -2.52
LHX1P48742 RNU6-330P-201ENST00000363015 107 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 SNORD77.2-201ENST00000391045 68 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 snoU83B.1-201ENST00000517136 88 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 AP001318.4-201ENST00000616637 121 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 MIR6818-201ENST00000621576 65 ntBASIC-0.7□□□□□ -2.52
LHX1P48742 RNU6-681P-201ENST00000364012 104 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 RNU6-219P-201ENST00000364728 107 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 SNORD113-1-201ENST00000365321 69 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 MIR224-201ENST00000384889 81 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 AL021921.1-201ENST00000442774 93 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.71□□□□□ -2.52
LHX1P48742 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 SNORD115-37-201ENST00000363768 82 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 RNU6-35P-201ENST00000384530 107 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 RNU6-732P-201ENST00000516033 103 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 SNORA40.13-201ENST00000516379 120 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 U7.5-201ENST00000517224 61 ntBASIC-0.72□□□□□ -2.52
LHX1P48742 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.72□□□□□ -2.52
LHX1P48742 RNU6-645P-201ENST00000364649 106 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 AL603908.1-201ENST00000406098 201 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.73□□□□□ -2.53
LHX1P48742 RNA5SP395-201ENST00000516567 118 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 RNU6-267P-201ENST00000516714 103 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 MIR4306-201ENST00000583390 91 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 MALAT1.1-201ENST00000618249 95 ntBASIC-0.73□□□□□ -2.53
LHX1P48742 RNU6-755P-201ENST00000364400 103 ntBASIC-0.74□□□□□ -2.53
LHX1P48742 SNORD116-22-201ENST00000384430 92 ntBASIC-0.74□□□□□ -2.53
LHX1P48742 AC074348.1-201ENST00000426503 132 ntBASIC-0.74□□□□□ -2.53
LHX1P48742 AC093729.1-201ENST00000513074 128 ntBASIC-0.74□□□□□ -2.53
LHX1P48742 RNU6-807P-201ENST00000516805 107 ntBASIC-0.74□□□□□ -2.53
LHX1P48742 RNU6-478P-201ENST00000363904 110 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 MIR604-201ENST00000384880 94 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 AL606753.1-201ENST00000427435 87 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 AL353691.2-201ENST00000443795 59 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 RNU7-88P-201ENST00000458752 63 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 RNU7-174P-201ENST00000516248 59 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 RNU6-557P-201ENST00000516842 110 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.75□□□□□ -2.53
LHX1P48742 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.76□□□□□ -2.53
LHX1P48742 MIR8485-201ENST00000401372 91 ntBASIC-0.76□□□□□ -2.53
LHX1P48742 RNU6-402P-201ENST00000410678 103 ntBASIC-0.76□□□□□ -2.53
LHX1P48742 RNU6-982P-201ENST00000516216 102 ntBASIC-0.76□□□□□ -2.53
LHX1P48742 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 MIR488-201ENST00000365739 83 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 RNU6-24P-201ENST00000384440 107 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 RNU6-587P-201ENST00000391282 106 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 RNU6-303P-201ENST00000517091 106 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 MIR548BB-201ENST00000626714 66 ntBASIC-0.77□□□□□ -2.53
LHX1P48742 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.78□□□□□ -2.53
LHX1P48742 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.78□□□□□ -2.53
LHX1P48742 MIR3675-201ENST00000583661 73 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms