Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AL162741.1-201ENST00000565563 1558 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MIR564-202ENST00000385049 94 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AC104390.1-201ENST00000555663 520 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AL121672.3-201ENST00000608644 468 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AL158211.5-201ENST00000623583 2518 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 FP475955.4-201ENST00000623131 1990 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AC141586.3-201ENST00000562166 1838 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 AC016734.2-201ENST00000624325 1377 ntBASIC19.36■□□□□ 0.69
TDP1Q9NUW8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 TSSC2-201ENST00000450217 709 ntBASIC19.36■□□□□ 0.69
TDP1Q9NUW8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 AC092119.3-201ENST00000612618 583 ntBASIC19.36■□□□□ 0.69
TDP1Q9NUW8 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.36■□□□□ 0.69
TDP1Q9NUW8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 AL121894.2-201ENST00000602977 491 ntBASIC19.35■□□□□ 0.69
TDP1Q9NUW8 AC010240.3-201ENST00000607688 395 ntBASIC19.35■□□□□ 0.69
TDP1Q9NUW8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TDP1Q9NUW8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 MIR662-201ENST00000384847 95 ntBASIC19.34■□□□□ 0.69
TDP1Q9NUW8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 AC092329.2-201ENST00000598402 547 ntBASIC19.34■□□□□ 0.69
TDP1Q9NUW8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms