Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 MED15P5-201ENST00000423150 992 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 HNRNPDP1-201ENST00000439535 754 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 AC239800.4-201ENST00000603712 296 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 AC116407.3-201ENST00000623905 1129 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 AC007225.1-201ENST00000566331 1836 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 Z69720.1-201ENST00000601483 472 ntBASIC16.01■□□□□ 0.15
CSMD1Q96PZ7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FAM215A-202ENST00000632077 792 ntBASIC16■□□□□ 0.15
CSMD1Q96PZ7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 AP006288.1-201ENST00000446065 395 ntBASIC16■□□□□ 0.15
CSMD1Q96PZ7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CSMD1Q96PZ7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16■□□□□ 0.15
CSMD1Q96PZ7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 UPF3AP3-201ENST00000420996 769 ntBASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 AC073130.3-201ENST00000624389 2278 ntBASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 AC006128.1-201ENST00000624704 1661 ntBASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CSMD1Q96PZ7 AF186996.4-201ENST00000467186 377 ntBASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms