Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 CNN2P11-201ENST00000429351 262 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 AC011467.4-201ENST00000594891 528 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 AL157888.1-201ENST00000631930 593 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 BCRP1-201ENST00000444246 691 ntBASIC18.43■□□□□ 0.54
CFAP54Q96N23 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 AC138761.1-201ENST00000584393 385 ntBASIC18.43■□□□□ 0.54
CFAP54Q96N23 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 AL136038.4-201ENST00000603606 1261 ntBASIC18.43■□□□□ 0.54
CFAP54Q96N23 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.43■□□□□ 0.54
CFAP54Q96N23 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CFAP54Q96N23 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 DPP3P2-201ENST00000416030 1696 ntBASIC18.42■□□□□ 0.54
CFAP54Q96N23 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 AL512408.1-201ENST00000569378 2000 ntBASIC18.42■□□□□ 0.54
CFAP54Q96N23 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CFAP54Q96N23 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.42■□□□□ 0.54
CFAP54Q96N23 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 AC099343.3-201ENST00000605834 2503 ntBASIC18.41■□□□□ 0.54
CFAP54Q96N23 AC040169.1-201ENST00000565382 521 ntBASIC18.41■□□□□ 0.54
CFAP54Q96N23 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 GPAT2P1-201ENST00000444924 1672 ntBASIC18.41■□□□□ 0.54
CFAP54Q96N23 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CFAP54Q96N23 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 BNIP3P18-201ENST00000593976 575 ntBASIC18.41■□□□□ 0.54
CFAP54Q96N23 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.41■□□□□ 0.54
CFAP54Q96N23 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CFAP54Q96N23 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms