Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 REXO1L10P-201ENST00000615707 1290 ntBASIC18.02■□□□□ 0.48
VMP1Q96GC9 REXO1L12P-201ENST00000622156 912 ntBASIC18.02■□□□□ 0.48
VMP1Q96GC9 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.02■□□□□ 0.48
VMP1Q96GC9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
VMP1Q96GC9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
VMP1Q96GC9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.02■□□□□ 0.47
VMP1Q96GC9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
VMP1Q96GC9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VMP1Q96GC9 FSCN1P1-201ENST00000568912 1481 ntBASIC18.01■□□□□ 0.47
VMP1Q96GC9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 AL160286.2-201ENST00000567150 934 ntBASIC18.01■□□□□ 0.47
VMP1Q96GC9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.01■□□□□ 0.47
VMP1Q96GC9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VMP1Q96GC9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 HTR7P1-202ENST00000624664 4411 ntBASIC18■□□□□ 0.47
VMP1Q96GC9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 AP000997.3-201ENST00000623333 2250 ntBASIC18■□□□□ 0.47
VMP1Q96GC9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 PCDHB18P-201ENST00000524813 2368 ntBASIC18■□□□□ 0.47
VMP1Q96GC9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18■□□□□ 0.47
VMP1Q96GC9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 MIR6786-201ENST00000616843 113 ntBASIC18■□□□□ 0.47
VMP1Q96GC9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18■□□□□ 0.47
VMP1Q96GC9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VMP1Q96GC9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VMP1Q96GC9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18■□□□□ 0.47
VMP1Q96GC9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms