Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL6A3P12111 ELL2P1-201ENST00000413990 1906 ntBASIC19.63■□□□□ 0.73
COL6A3P12111 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 RBM17P3-201ENST00000417687 1192 ntBASIC19.63■□□□□ 0.73
COL6A3P12111 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.63■□□□□ 0.73
COL6A3P12111 AC114341.1-201ENST00000618070 349 ntBASIC19.63■□□□□ 0.73
COL6A3P12111 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.63■□□□□ 0.73
COL6A3P12111 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
COL6A3P12111 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.63■□□□□ 0.73
COL6A3P12111 PLK5-205ENST00000642079 1969 ntBASIC19.62■□□□□ 0.73
COL6A3P12111 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.62■□□□□ 0.73
COL6A3P12111 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.62■□□□□ 0.73
COL6A3P12111 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.62■□□□□ 0.73
COL6A3P12111 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.62■□□□□ 0.73
COL6A3P12111 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL6A3P12111 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.62■□□□□ 0.73
COL6A3P12111 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL6A3P12111 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL6A3P12111 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A3P12111 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.62■□□□□ 0.73
COL6A3P12111 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.62■□□□□ 0.73
COL6A3P12111 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
COL6A3P12111 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 OR8S1-201ENST00000310194 1080 ntBASIC19.61■□□□□ 0.73
COL6A3P12111 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.61■□□□□ 0.73
COL6A3P12111 AP005117.1-201ENST00000584346 1413 ntBASIC19.61■□□□□ 0.73
COL6A3P12111 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A3P12111 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.61■□□□□ 0.73
COL6A3P12111 MTDHP3-201ENST00000594186 672 ntBASIC19.61■□□□□ 0.73
COL6A3P12111 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL6A3P12111 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL6A3P12111 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.6■□□□□ 0.73
COL6A3P12111 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A3P12111 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A3P12111 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 AC244015.2-201ENST00000616358 1861 ntBASIC19.6■□□□□ 0.73
COL6A3P12111 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 AC002310.6-201ENST00000624451 1377 ntBASIC19.6■□□□□ 0.73
COL6A3P12111 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A3P12111 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
COL6A3P12111 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.6■□□□□ 0.73
COL6A3P12111 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A3P12111 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A3P12111 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL6A3P12111 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.59■□□□□ 0.73
COL6A3P12111 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A3P12111 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL6A3P12111 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms