Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-502P-201ENST00000362419 108 ntBASIC-0.49□□□□□ -2.49
LIME1Q9H400 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.49□□□□□ -2.49
LIME1Q9H400 RNU6-406P-201ENST00000516470 107 ntBASIC-0.49□□□□□ -2.49
LIME1Q9H400 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.49□□□□□ -2.49
LIME1Q9H400 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 MIR1236-201ENST00000408340 102 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 RNU6-162P-201ENST00000516228 103 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 MIR4432-201ENST00000581823 84 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 AC006254.2-201ENST00000603259 279 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 MIR2052-201ENST00000636055 55 ntBASIC-0.5□□□□□ -2.49
LIME1Q9H400 RNU6-824P-201ENST00000363724 104 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 MIR196A2-201ENST00000385189 110 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 MT-TQ-201ENST00000387372 72 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 RNU4-63P-201ENST00000411313 118 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 RNU6-789P-201ENST00000517105 102 ntBASIC-0.51□□□□□ -2.49
LIME1Q9H400 MIR450A1-201ENST00000362262 91 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 RNU6-990P-201ENST00000364385 104 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 RNU6-973P-201ENST00000364690 107 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 RNU6-382P-201ENST00000365181 106 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 snoU13.13-201ENST00000458842 104 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 U6.81-201ENST00000612550 106 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 MIR6773-201ENST00000612812 74 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 AC093726.3-201ENST00000637588 150 ntBASIC-0.52□□□□□ -2.49
LIME1Q9H400 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.53□□□□□ -2.49
LIME1Q9H400 MIR548AZ-201ENST00000616567 95 ntBASIC-0.53□□□□□ -2.49
LIME1Q9H400 uc_338.36-201ENST00000622331 158 ntBASIC-0.53□□□□□ -2.49
LIME1Q9H400 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 AL606753.1-201ENST00000427435 87 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 snoU13.17-201ENST00000458802 104 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 AP001318.4-201ENST00000616637 121 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 AL391099.1-201ENST00000624635 187 ntBASIC-0.54□□□□□ -2.5
LIME1Q9H400 SNORD115-27-201ENST00000364430 82 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 MIRLET7B-201ENST00000385140 83 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 RNU6-284P-201ENST00000411105 106 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 AC021146.9-201ENST00000512503 156 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 MIR4280-201ENST00000582178 76 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 MIR6851-201ENST00000617060 67 ntBASIC-0.55□□□□□ -2.5
LIME1Q9H400 RNU6-215P-201ENST00000365169 102 ntBASIC-0.56□□□□□ -2.5
LIME1Q9H400 RNU6-337P-201ENST00000391243 106 ntBASIC-0.56□□□□□ -2.5
LIME1Q9H400 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.56□□□□□ -2.5
LIME1Q9H400 SNORD115-23-201ENST00000364461 82 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 RNU6-901P-201ENST00000384593 106 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 RNU6-592P-201ENST00000411333 103 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 RNY1P9-201ENST00000532431 109 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 MIR4773-1-201ENST00000637203 78 ntBASIC-0.57□□□□□ -2.5
LIME1Q9H400 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.58□□□□□ -2.5
LIME1Q9H400 SNORD114-14-201ENST00000362723 75 ntBASIC-0.58□□□□□ -2.5
LIME1Q9H400 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.58□□□□□ -2.5
LIME1Q9H400 MIR519C-201ENST00000385053 87 ntBASIC-0.58□□□□□ -2.5
LIME1Q9H400 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.58□□□□□ -2.5
LIME1Q9H400 RNU4-61P-201ENST00000411243 107 ntBASIC-0.58□□□□□ -2.5
LIME1Q9H400 RNU7-153P-201ENST00000516455 62 ntBASIC-0.58□□□□□ -2.5
LIME1Q9H400 RNU6-633P-201ENST00000362612 103 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 SNORA2.1-201ENST00000363089 137 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 MIR1468-201ENST00000410600 86 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 AL445193.1-201ENST00000441183 141 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 AC114755.3-201ENST00000481111 251 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 SNORA40.13-201ENST00000516379 120 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 MALAT1.1-201ENST00000618249 95 ntBASIC-0.59□□□□□ -2.5
LIME1Q9H400 RNU6-497P-201ENST00000365316 104 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 RNU6-260P-201ENST00000384092 107 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 SNX3P1X-201ENST00000414887 175 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 SNORA13-201ENST00000458790 133 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 RNU6-274P-201ENST00000459566 107 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.6□□□□□ -2.51
LIME1Q9H400 RNU6-919P-201ENST00000516731 104 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 MIR4668-201ENST00000582284 70 ntBASIC-0.6□□□□□ -2.51
LIME1Q9H400 RNU6-752P-201ENST00000516376 102 ntBASIC-0.61□□□□□ -2.51
LIME1Q9H400 RNA5SP169-201ENST00000517268 117 ntBASIC-0.61□□□□□ -2.51
LIME1Q9H400 MIR3657-201ENST00000584818 117 ntBASIC-0.61□□□□□ -2.51
LIME1Q9H400 MIR6509-201ENST00000614603 85 ntBASIC-0.61□□□□□ -2.51
LIME1Q9H400 RNU6-32P-201ENST00000383948 107 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 RNU6-13P-201ENST00000384248 107 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 RNU6-12P-201ENST00000384604 107 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 RNU6-41P-201ENST00000384741 107 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.62□□□□□ -2.51
LIME1Q9H400 SNORA63.4-201ENST00000362763 126 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 RNU6-640P-201ENST00000363693 105 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 RNU6-219P-201ENST00000364728 107 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 SNORD20-201ENST00000384550 80 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 AL450471.1-201ENST00000447509 127 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 SNORD57-201ENST00000448188 72 ntBASIC-0.63□□□□□ -2.51
LIME1Q9H400 RNU6-208P-201ENST00000362431 107 ntBASIC-0.64□□□□□ -2.51
LIME1Q9H400 RNU6-147P-201ENST00000383983 107 ntBASIC-0.64□□□□□ -2.51
LIME1Q9H400 SNORD77.2-201ENST00000391045 68 ntBASIC-0.64□□□□□ -2.51
LIME1Q9H400 SNORD75.1-201ENST00000408373 60 ntBASIC-0.64□□□□□ -2.51
LIME1Q9H400 SNORD38.3-201ENST00000516599 73 ntBASIC-0.64□□□□□ -2.51
LIME1Q9H400 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.65□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms