Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIR548I1-201ENST00000408810 149 ntBASIC-1.07□□□□□ -2.58
RFX3P48380 SNX3P1X-201ENST00000414887 175 ntBASIC-1.07□□□□□ -2.58
RFX3P48380 RNU6-274P-201ENST00000459566 107 ntBASIC-1.07□□□□□ -2.58
RFX3P48380 RNA5SP470-201ENST00000516463 106 ntBASIC-1.07□□□□□ -2.58
RFX3P48380 AC012531.4-201ENST00000616509 177 ntBASIC-1.07□□□□□ -2.58
RFX3P48380 MIR1255B2-201ENST00000408618 67 ntBASIC-1.08□□□□□ -2.58
RFX3P48380 MTATP6P29-201ENST00000415057 132 ntBASIC-1.08□□□□□ -2.58
RFX3P48380 SNORD33.1-201ENST00000516213 88 ntBASIC-1.08□□□□□ -2.58
RFX3P48380 RNU6-24P-201ENST00000384440 107 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 RNU6-257P-201ENST00000410238 98 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 RNU7-200P-201ENST00000516105 62 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 MIR378F-201ENST00000578143 78 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 MIR3657-201ENST00000584818 117 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 AC006254.2-201ENST00000603259 279 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 MIR3914-2-201ENST00000637339 95 ntBASIC-1.09□□□□□ -2.58
RFX3P48380 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 RNU6-260P-201ENST00000384092 107 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 SNORA19.1-201ENST00000410656 129 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 MIR6509-201ENST00000614603 85 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 U6.95-201ENST00000636931 70 ntBASIC-1.1□□□□□ -2.59
RFX3P48380 snoU83B.1-201ENST00000517136 88 ntBASIC-1.11□□□□□ -2.59
RFX3P48380 AC099654.10-201ENST00000640395 161 ntBASIC-1.11□□□□□ -2.59
RFX3P48380 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.12□□□□□ -2.59
RFX3P48380 RNU6-746P-201ENST00000384112 109 ntBASIC-1.12□□□□□ -2.59
RFX3P48380 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.12□□□□□ -2.59
RFX3P48380 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.12□□□□□ -2.59
RFX3P48380 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.12□□□□□ -2.59
RFX3P48380 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 RNU6-80P-201ENST00000384195 107 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 MIR548A3-201ENST00000385297 97 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 RNU7-134P-201ENST00000458997 64 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 AC026421.1-201ENST00000519101 163 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 CYP3A54P-201ENST00000566950 75 ntBASIC-1.13□□□□□ -2.59
RFX3P48380 RNU5F-1-201ENST00000362507 117 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 SNORA2.1-201ENST00000363089 137 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 RNY1P5-201ENST00000383890 115 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 RNU6-971P-201ENST00000516920 106 ntBASIC-1.14□□□□□ -2.59
RFX3P48380 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.15□□□□□ -2.59
RFX3P48380 RNU6-972P-201ENST00000391208 107 ntBASIC-1.15□□□□□ -2.59
RFX3P48380 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.15□□□□□ -2.59
RFX3P48380 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.16□□□□□ -2.6
RFX3P48380 RNA5SP192-201ENST00000364404 120 ntBASIC-1.16□□□□□ -2.6
RFX3P48380 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.16□□□□□ -2.6
RFX3P48380 AL691482.2-201ENST00000457453 84 ntBASIC-1.16□□□□□ -2.6
RFX3P48380 SNORD63.1-201ENST00000516178 80 ntBASIC-1.16□□□□□ -2.6
RFX3P48380 RNU2-51P-201ENST00000410708 197 ntBASIC-1.17□□□□□ -2.6
RFX3P48380 RNU6-412P-201ENST00000516434 106 ntBASIC-1.17□□□□□ -2.6
RFX3P48380 MIR3165-201ENST00000579874 75 ntBASIC-1.17□□□□□ -2.6
RFX3P48380 U6.81-201ENST00000612550 106 ntBASIC-1.17□□□□□ -2.6
RFX3P48380 MIR4320-201ENST00000636981 65 ntBASIC-1.17□□□□□ -2.6
RFX3P48380 SNORD58A-201ENST00000383875 65 ntBASIC-1.18□□□□□ -2.6
RFX3P48380 RNU6-346P-201ENST00000516288 111 ntBASIC-1.18□□□□□ -2.6
RFX3P48380 MIR3115-201ENST00000577915 68 ntBASIC-1.18□□□□□ -2.6
RFX3P48380 SNORD115-22-201ENST00000364456 82 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 MIR519A2-201ENST00000384990 87 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 RNU6-887P-201ENST00000410660 100 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 SCARNA23-201ENST00000516060 130 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 RNU6-659P-201ENST00000516454 104 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 MIR548AG1-201ENST00000579932 66 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 MIR4796-201ENST00000580742 81 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 MIR4306-201ENST00000583390 91 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.19□□□□□ -2.6
RFX3P48380 SNORA26.4-201ENST00000391188 123 ntBASIC-1.2□□□□□ -2.6
RFX3P48380 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.2□□□□□ -2.6
RFX3P48380 RNU6-924P-201ENST00000362926 108 ntBASIC-1.21□□□□□ -2.6
RFX3P48380 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.21□□□□□ -2.6
RFX3P48380 RNU6-880P-201ENST00000384526 107 ntBASIC-1.21□□□□□ -2.6
RFX3P48380 RNU6-518P-201ENST00000516056 96 ntBASIC-1.21□□□□□ -2.6
RFX3P48380 RNU6-904P-201ENST00000516206 101 ntBASIC-1.21□□□□□ -2.6
RFX3P48380 SNORD116-10-201ENST00000363791 102 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 MIR521-2-201ENST00000384818 87 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 RNU7-61P-201ENST00000515897 61 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 RNU7-153P-201ENST00000516455 62 ntBASIC-1.22□□□□□ -2.6
RFX3P48380 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.23□□□□□ -2.61
RFX3P48380 MIR1468-201ENST00000410600 86 ntBASIC-1.23□□□□□ -2.61
RFX3P48380 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.23□□□□□ -2.61
RFX3P48380 RNU7-154P-201ENST00000516194 62 ntBASIC-1.23□□□□□ -2.61
RFX3P48380 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.24□□□□□ -2.61
RFX3P48380 RNU6-162P-201ENST00000516228 103 ntBASIC-1.24□□□□□ -2.61
RFX3P48380 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.24□□□□□ -2.61
RFX3P48380 SNORD115-33-201ENST00000363723 82 ntBASIC-1.25□□□□□ -2.61
RFX3P48380 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.25□□□□□ -2.61
RFX3P48380 RNU7-88P-201ENST00000458752 63 ntBASIC-1.25□□□□□ -2.61
RFX3P48380 RNU6-255P-201ENST00000516957 105 ntBASIC-1.25□□□□□ -2.61
RFX3P48380 MIR6818-201ENST00000621576 65 ntBASIC-1.25□□□□□ -2.61
RFX3P48380 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.26□□□□□ -2.61
RFX3P48380 SNORD115-27-201ENST00000364430 82 ntBASIC-1.26□□□□□ -2.61
RFX3P48380 MIR8485-201ENST00000401372 91 ntBASIC-1.26□□□□□ -2.61
RFX3P48380 RNU6-479P-201ENST00000516348 105 ntBASIC-1.26□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 232.7 ms