Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 snoR1.1-201ENST00000628177 80 ntBASIC3.11□□□□□ -1.91
MSH5O43196 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH5O43196 RNA5SP338-201ENST00000410495 85 ntBASIC3.1□□□□□ -1.91
MSH5O43196 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH5O43196 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSH5O43196 MIR573-201ENST00000384964 99 ntBASIC3.09□□□□□ -1.91
MSH5O43196 AC008834.1-201ENST00000511612 175 ntBASIC3.09□□□□□ -1.91
MSH5O43196 RNU6-732P-201ENST00000516033 103 ntBASIC3.08□□□□□ -1.92
MSH5O43196 Y_RNA.613-201ENST00000410726 97 ntBASIC3.07□□□□□ -1.92
MSH5O43196 AC026436.1-201ENST00000510537 270 ntBASIC3.07□□□□□ -1.92
MSH5O43196 MIR5092-201ENST00000583139 88 ntBASIC3.07□□□□□ -1.92
MSH5O43196 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
MSH5O43196 RNU1-52P-201ENST00000384190 164 ntBASIC3.06□□□□□ -1.92
MSH5O43196 AC104435.1-201ENST00000483483 166 ntBASIC3.06□□□□□ -1.92
MSH5O43196 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH5O43196 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
MSH5O43196 MIR4448-201ENST00000584360 86 ntBASIC3.04□□□□□ -1.92
MSH5O43196 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC3.04□□□□□ -1.92
MSH5O43196 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
MSH5O43196 Y_RNA.406-201ENST00000383984 100 ntBASIC3.02□□□□□ -1.93
MSH5O43196 SNORA64-201ENST00000384674 134 ntBASIC3.02□□□□□ -1.93
MSH5O43196 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.01□□□□□ -1.93
MSH5O43196 MIR30A-201ENST00000385092 71 ntBASIC3.01□□□□□ -1.93
MSH5O43196 Y_RNA.226-201ENST00000364337 114 ntBASIC3□□□□□ -1.93
MSH5O43196 MIR144-201ENST00000384886 86 ntBASIC3□□□□□ -1.93
MSH5O43196 MIR1291-201ENST00000627649 87 ntBASIC3□□□□□ -1.93
MSH5O43196 RNU6-836P-201ENST00000362920 107 ntBASIC2.99□□□□□ -1.93
MSH5O43196 RNA5SP456-201ENST00000364002 114 ntBASIC2.99□□□□□ -1.93
MSH5O43196 RNU1-29P-201ENST00000606574 126 ntBASIC2.99□□□□□ -1.93
MSH5O43196 MIR6895-201ENST00000613497 78 ntBASIC2.99□□□□□ -1.93
MSH5O43196 SNORA70.22-201ENST00000517160 124 ntBASIC2.98□□□□□ -1.93
MSH5O43196 MIR6840-201ENST00000611937 71 ntBASIC2.98□□□□□ -1.93
MSH5O43196 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
MSH5O43196 AP000676.1-201ENST00000533307 52 ntBASIC2.97□□□□□ -1.93
MSH5O43196 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
MSH5O43196 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
MSH5O43196 SNORD23.1-201ENST00000408212 104 ntBASIC2.96□□□□□ -1.94
MSH5O43196 RNU6-295P-201ENST00000516901 104 ntBASIC2.96□□□□□ -1.94
MSH5O43196 MIR5706-201ENST00000579841 80 ntBASIC2.96□□□□□ -1.94
MSH5O43196 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSH5O43196 SNORD19-201ENST00000391191 68 ntBASIC2.95□□□□□ -1.94
MSH5O43196 RNU6-1053P-201ENST00000515930 101 ntBASIC2.95□□□□□ -1.94
MSH5O43196 MIR1287-201ENST00000408492 90 ntBASIC2.94□□□□□ -1.94
MSH5O43196 RNU6-717P-201ENST00000459076 104 ntBASIC2.94□□□□□ -1.94
MSH5O43196 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH5O43196 SNORD60-201ENST00000383903 83 ntBASIC2.93□□□□□ -1.94
MSH5O43196 AC002429.1-201ENST00000437672 148 ntBASIC2.93□□□□□ -1.94
MSH5O43196 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.92□□□□□ -1.94
MSH5O43196 RNU1-17P-201ENST00000363022 152 ntBASIC2.92□□□□□ -1.94
MSH5O43196 Y_RNA.320-201ENST00000365144 102 ntBASIC2.92□□□□□ -1.94
MSH5O43196 MIR5694-201ENST00000581190 76 ntBASIC2.92□□□□□ -1.94
MSH5O43196 MIR5002-201ENST00000584713 97 ntBASIC2.92□□□□□ -1.94
MSH5O43196 Y_RNA.118-201ENST00000363300 101 ntBASIC2.9□□□□□ -1.95
MSH5O43196 SNORA62.4-201ENST00000365504 151 ntBASIC2.9□□□□□ -1.95
MSH5O43196 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
MSH5O43196 MIR219B-201ENST00000637023 88 ntBASIC2.9□□□□□ -1.95
MSH5O43196 SNORD12-201ENST00000391002 90 ntBASIC2.89□□□□□ -1.95
MSH5O43196 MIR4299-201ENST00000577899 72 ntBASIC2.89□□□□□ -1.95
MSH5O43196 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
MSH5O43196 RNU6-392P-201ENST00000364926 101 ntBASIC2.88□□□□□ -1.95
MSH5O43196 MIR222-201ENST00000384992 110 ntBASIC2.88□□□□□ -1.95
MSH5O43196 MIR4498-201ENST00000577599 66 ntBASIC2.88□□□□□ -1.95
MSH5O43196 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.87□□□□□ -1.95
MSH5O43196 SNORA25-201ENST00000384384 134 ntBASIC2.87□□□□□ -1.95
MSH5O43196 uc_338.36-201ENST00000622331 158 ntBASIC2.87□□□□□ -1.95
MSH5O43196 MIR5007-201ENST00000583098 95 ntBASIC2.86□□□□□ -1.95
MSH5O43196 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
MSH5O43196 MIR18A-201ENST00000362310 71 ntBASIC2.85□□□□□ -1.95
MSH5O43196 RNA5SP160-201ENST00000364866 120 ntBASIC2.85□□□□□ -1.95
MSH5O43196 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.85□□□□□ -1.95
MSH5O43196 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH5O43196 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
MSH5O43196 RN7SL660P-201ENST00000614852 299 ntBASIC2.84□□□□□ -1.95
MSH5O43196 MIRLET7G-201ENST00000362280 84 ntBASIC2.83□□□□□ -1.96
MSH5O43196 MIR548N-201ENST00000408742 75 ntBASIC2.83□□□□□ -1.96
MSH5O43196 RNU6-68P-201ENST00000516576 104 ntBASIC2.83□□□□□ -1.96
MSH5O43196 AC245884.12-201ENST00000615364 59 ntBASIC2.83□□□□□ -1.96
MSH5O43196 AC108667.1-201ENST00000428618 249 ntBASIC2.82□□□□□ -1.96
MSH5O43196 FABP5P4-201ENST00000437203 171 ntBASIC2.82□□□□□ -1.96
MSH5O43196 MIR524-201ENST00000385242 87 ntBASIC2.81□□□□□ -1.96
MSH5O43196 MIR6845-201ENST00000613182 61 ntBASIC2.81□□□□□ -1.96
MSH5O43196 Y_RNA.260-201ENST00000364628 101 ntBASIC2.8□□□□□ -1.96
MSH5O43196 MIR583-201ENST00000384846 75 ntBASIC2.8□□□□□ -1.96
MSH5O43196 AC084368.1-201ENST00000620935 65 ntBASIC2.8□□□□□ -1.96
MSH5O43196 MIR6132-201ENST00000622083 109 ntBASIC2.8□□□□□ -1.96
MSH5O43196 AC069271.1-201ENST00000445577 156 ntBASIC2.79□□□□□ -1.96
MSH5O43196 uc_338.20-201ENST00000621563 178 ntBASIC2.79□□□□□ -1.96
MSH5O43196 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
MSH5O43196 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
MSH5O43196 RNU6-1233P-201ENST00000362922 102 ntBASIC2.78□□□□□ -1.96
MSH5O43196 RNU6-608P-201ENST00000383927 104 ntBASIC2.78□□□□□ -1.96
MSH5O43196 RNU1-78P-201ENST00000391248 165 ntBASIC2.78□□□□□ -1.96
MSH5O43196 U7.6-201ENST00000610841 64 ntBASIC2.78□□□□□ -1.96
MSH5O43196 AL391099.1-201ENST00000624635 187 ntBASIC2.78□□□□□ -1.96
MSH5O43196 RNA5SP224-201ENST00000365069 126 ntBASIC2.77□□□□□ -1.97
MSH5O43196 RNA5SP37-201ENST00000365420 130 ntBASIC2.77□□□□□ -1.97
MSH5O43196 MIR6766-201ENST00000622641 72 ntBASIC2.77□□□□□ -1.97
MSH5O43196 RNU6-1133P-201ENST00000410963 100 ntBASIC2.76□□□□□ -1.97
MSH5O43196 MIR4677-201ENST00000584153 80 ntBASIC2.75□□□□□ -1.97
MSH5O43196 MIR1197-201ENST00000408818 88 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 204.9 ms