Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 SNORA70.25-201ENST00000612741 95 ntBASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 MIR548O2-201ENST00000616090 70 ntBASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 RNU7-74P-201ENST00000459104 62 ntBASIC0.59□□□□□ -2.31
NR2E3Q9Y5X4 RNU6-242P-201ENST00000384359 107 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 MIR329-2-201ENST00000385029 84 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 MT-TY-201ENST00000387409 66 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-557P-201ENST00000516842 110 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 MIR6755-201ENST00000619993 66 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 MIR1245B-201ENST00000636115 69 ntBASIC0.58□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-228P-201ENST00000362700 106 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 Y_RNA.313-201ENST00000365095 103 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 SNORA50A-201ENST00000384225 134 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 MIR6759-201ENST00000638110 65 ntBASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
NR2E3Q9Y5X4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.56□□□□□ -2.32
NR2E3Q9Y5X4 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
NR2E3Q9Y5X4 SNORA68.3-201ENST00000515906 83 ntBASIC0.56□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-1057P-201ENST00000517162 102 ntBASIC0.56□□□□□ -2.32
NR2E3Q9Y5X4 NAMPTP3-201ENST00000569273 224 ntBASIC0.56□□□□□ -2.32
NR2E3Q9Y5X4 Y_RNA.94-201ENST00000363068 106 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 SNORD44.1-201ENST00000363202 61 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-824P-201ENST00000363724 104 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 Y_RNA.219-201ENST00000364232 113 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-652P-201ENST00000365488 107 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 Y_RNA.437-201ENST00000384113 113 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-1108P-201ENST00000516308 104 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 MIR4636-201ENST00000582271 80 ntBASIC0.55□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-161P-201ENST00000363051 106 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 RNY4P3-201ENST00000365254 95 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-54P-201ENST00000365563 107 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-129P-201ENST00000391022 107 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 RNU2-59P-201ENST00000410482 191 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 AC069503.3-201ENST00000618674 145 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 AC073869.9-201ENST00000641610 120 ntBASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
NR2E3Q9Y5X4 MIRLET7A1-201ENST00000362295 80 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 RNU6V-201ENST00000384105 107 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 Y_RNA.532-201ENST00000384590 113 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 MIR216B-201ENST00000390186 82 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 SNORD77.2-201ENST00000391045 68 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-1177P-201ENST00000391058 104 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-863P-201ENST00000515989 104 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 MIR4460-201ENST00000577862 86 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 MIR4712-201ENST00000583750 82 ntBASIC0.53□□□□□ -2.32
NR2E3Q9Y5X4 RNU6-208P-201ENST00000362431 107 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 RNU5F-1-201ENST00000362507 117 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-1124P-201ENST00000384169 107 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 SNORD78.1-201ENST00000390866 65 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 HMGN2P22-201ENST00000427588 175 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 SNORD42B-201ENST00000458893 67 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 MIR3202-2-201ENST00000635980 79 ntBASIC0.52□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-495P-201ENST00000362995 107 ntBASIC0.51□□□□□ -2.33
NR2E3Q9Y5X4 AC097510.1-201ENST00000510945 133 ntBASIC0.51□□□□□ -2.33
NR2E3Q9Y5X4 RNU5B-6P-201ENST00000516765 68 ntBASIC0.51□□□□□ -2.33
NR2E3Q9Y5X4 U6.81-201ENST00000612550 106 ntBASIC0.51□□□□□ -2.33
NR2E3Q9Y5X4 MIR103A1-201ENST00000362165 78 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 MIRLET7D-201ENST00000362263 87 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-315P-201ENST00000362666 107 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-686P-201ENST00000364839 107 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 SNORD110-201ENST00000408189 75 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 MIR1255A-201ENST00000408338 113 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 Y_RNA.606-201ENST00000410579 103 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 Y_RNA.660-201ENST00000516002 120 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 MIR5706-201ENST00000579841 80 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 YWHAEP2-201ENST00000580066 112 ntBASIC0.5□□□□□ -2.33
NR2E3Q9Y5X4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-1275P-201ENST00000391087 107 ntBASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 AC006210.1-201ENST00000424882 111 ntBASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 snoU13.19-201ENST00000459148 104 ntBASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 MIR548AE1-201ENST00000583292 70 ntBASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-382P-201ENST00000365181 106 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU7-24P-201ENST00000458867 62 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-848P-201ENST00000515948 107 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-617P-201ENST00000516147 107 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-473P-201ENST00000516164 107 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 MIR5589-201ENST00000579442 60 ntBASIC0.48□□□□□ -2.33
NR2E3Q9Y5X4 RNU6-340P-201ENST00000364005 107 ntBASIC0.47□□□□□ -2.33
NR2E3Q9Y5X4 Y_RNA.264-201ENST00000364665 102 ntBASIC0.47□□□□□ -2.33
NR2E3Q9Y5X4 RNA5SP225-201ENST00000410874 135 ntBASIC0.47□□□□□ -2.33
NR2E3Q9Y5X4 AC090625.1-201ENST00000357130 210 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 Y_RNA.12-201ENST00000362393 112 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 SNORA2A-201ENST00000383885 135 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 MIR501-201ENST00000390204 84 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-279P-201ENST00000391297 101 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 SNORD75.2-201ENST00000408784 58 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 AC074348.1-201ENST00000426503 132 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 YWHAEP3-201ENST00000582767 121 ntBASIC0.46□□□□□ -2.34
NR2E3Q9Y5X4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.45□□□□□ -2.34
NR2E3Q9Y5X4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.45□□□□□ -2.34
NR2E3Q9Y5X4 Y_RNA.371-201ENST00000365591 113 ntBASIC0.44□□□□□ -2.34
NR2E3Q9Y5X4 RNA5SP299-201ENST00000391203 116 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms