Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR216B-201ENST00000390186 82 ntBASIC0.09□□□□□ -2.4
HDAC4P56524 SNORA40.13-201ENST00000516379 120 ntBASIC0.09□□□□□ -2.4
HDAC4P56524 MIR3140-201ENST00000583685 90 ntBASIC0.09□□□□□ -2.4
HDAC4P56524 RNU6V-201ENST00000384105 107 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 Y_RNA.491-201ENST00000384417 107 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 MIR548U-201ENST00000390728 81 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 MIR876-201ENST00000401147 81 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 RNU6-1052P-201ENST00000411398 104 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 Y_RNA.677-201ENST00000516401 85 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 RNU6-719P-201ENST00000516671 104 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 RNU6-1057P-201ENST00000517162 102 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 MALAT1.1-201ENST00000618249 95 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 MIR2052-201ENST00000636055 55 ntBASIC0.08□□□□□ -2.4
HDAC4P56524 SNORD114-31-201ENST00000363219 75 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 RNU6-153P-201ENST00000364422 104 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 SNORA24B-201ENST00000384176 131 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 U3.27-201ENST00000391237 200 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 SNORA18.5-201ENST00000516616 101 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 MIR4743-201ENST00000584576 69 ntBASIC0.07□□□□□ -2.4
HDAC4P56524 SNORD114-5-201ENST00000362928 70 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 RNU4-32P-201ENST00000363404 141 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 RNA5SP368-201ENST00000364298 116 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 RNU6-54P-201ENST00000365563 107 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 MIR516B1-201ENST00000385211 90 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 MIR892B-201ENST00000401279 77 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 FGF7P7-201ENST00000514120 227 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 Y_RNA.660-201ENST00000516002 120 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 SCARNA11.2-201ENST00000517183 154 ntBASIC0.06□□□□□ -2.4
HDAC4P56524 SNORA63.2-201ENST00000362603 126 ntBASIC0.05□□□□□ -2.4
HDAC4P56524 MIR593-201ENST00000384856 100 ntBASIC0.05□□□□□ -2.4
HDAC4P56524 MIR145-201ENST00000384967 88 ntBASIC0.05□□□□□ -2.4
HDAC4P56524 SNORD114-16-201ENST00000363044 70 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 SNORD115-27-201ENST00000364430 82 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RNU6-302P-201ENST00000365249 107 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RNU6-1051P-201ENST00000365471 102 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 Y_RNA.407-201ENST00000383986 113 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 Y_RNA.437-201ENST00000384113 113 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RNA5SP89-201ENST00000410300 108 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RNU6-168P-201ENST00000516189 101 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RN7SL660P-201ENST00000614852 299 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 uc_338.10-201ENST00000621872 182 ntBASIC0.04□□□□□ -2.4
HDAC4P56524 RNU7-188P-201ENST00000517063 64 ntBASIC0.03□□□□□ -2.4
HDAC4P56524 AC084368.1-201ENST00000620935 65 ntBASIC0.03□□□□□ -2.4
HDAC4P56524 Y_RNA.81-201ENST00000362997 102 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 RNA5SP331-201ENST00000364986 107 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 RNU6-154P-201ENST00000384306 106 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 MIR652-201ENST00000385278 98 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 SNORA75.1-201ENST00000391130 148 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 SNORD42B-201ENST00000458893 67 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 RNU7-153P-201ENST00000516455 62 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 RNU6-180P-201ENST00000516697 61 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
HDAC4P56524 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
HDAC4P56524 MIR4493-201ENST00000584016 73 ntBASIC0.01□□□□□ -2.41
HDAC4P56524 AP001180.6-201ENST00000584918 159 ntBASIC0.01□□□□□ -2.41
HDAC4P56524 Y_RNA.558-201ENST00000384685 113 ntBASIC0□□□□□ -2.41
HDAC4P56524 RNY1P7-201ENST00000384743 110 ntBASIC0□□□□□ -2.41
HDAC4P56524 MIR604-201ENST00000384880 94 ntBASIC0□□□□□ -2.41
HDAC4P56524 RNA5SP163-201ENST00000410304 99 ntBASIC0□□□□□ -2.41
HDAC4P56524 RNU6-175P-201ENST00000516896 107 ntBASIC0□□□□□ -2.41
HDAC4P56524 MIR4668-201ENST00000582284 70 ntBASIC0□□□□□ -2.41
HDAC4P56524 RNU7-165P-201ENST00000458864 60 ntBASIC-0.01□□□□□ -2.41
HDAC4P56524 RNA5SP67-201ENST00000516422 131 ntBASIC-0.01□□□□□ -2.41
HDAC4P56524 MIR4796-201ENST00000580742 81 ntBASIC-0.01□□□□□ -2.41
HDAC4P56524 RNU6-219P-201ENST00000364728 107 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 RNU6-497P-201ENST00000365316 104 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 MIR1236-201ENST00000408340 102 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 snoU13.17-201ENST00000458802 104 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 RNU6-762P-201ENST00000517107 102 ntBASIC-0.02□□□□□ -2.41
HDAC4P56524 AC108676.2-201ENST00000605225 163 ntBASIC-0.03□□□□□ -2.41
HDAC4P56524 MIR6514-201ENST00000622549 70 ntBASIC-0.03□□□□□ -2.41
HDAC4P56524 RNU6-633P-201ENST00000362612 103 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU6-495P-201ENST00000362995 107 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU6-49P-201ENST00000384256 107 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU6-929P-201ENST00000384429 107 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU7-159P-201ENST00000459284 62 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU6-267P-201ENST00000516714 103 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.04□□□□□ -2.42
HDAC4P56524 SNORD114-29-201ENST00000364819 70 ntBASIC-0.05□□□□□ -2.42
HDAC4P56524 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
HDAC4P56524 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.05□□□□□ -2.42
HDAC4P56524 MTATP6P29-201ENST00000415057 132 ntBASIC-0.05□□□□□ -2.42
HDAC4P56524 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.05□□□□□ -2.42
HDAC4P56524 MIR582-201ENST00000365731 98 ntBASIC-0.06□□□□□ -2.42
HDAC4P56524 MIR106A-201ENST00000384870 81 ntBASIC-0.06□□□□□ -2.42
HDAC4P56524 MIR519C-201ENST00000385053 87 ntBASIC-0.06□□□□□ -2.42
HDAC4P56524 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
HDAC4P56524 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
HDAC4P56524 RNU6-402P-201ENST00000410678 103 ntBASIC-0.06□□□□□ -2.42
HDAC4P56524 CR383656.4-201ENST00000546909 122 ntBASIC-0.06□□□□□ -2.42
HDAC4P56524 RNU6-46P-201ENST00000383860 107 ntBASIC-0.07□□□□□ -2.42
HDAC4P56524 SNORD116-22-201ENST00000384430 92 ntBASIC-0.07□□□□□ -2.42
HDAC4P56524 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.07□□□□□ -2.42
HDAC4P56524 MIR4645-201ENST00000583158 77 ntBASIC-0.07□□□□□ -2.42
HDAC4P56524 MIR148A-201ENST00000362215 68 ntBASIC-0.08□□□□□ -2.42
HDAC4P56524 MIR20A-201ENST00000362279 71 ntBASIC-0.08□□□□□ -2.42
HDAC4P56524 RNU6-824P-201ENST00000363724 104 ntBASIC-0.08□□□□□ -2.42
HDAC4P56524 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.08□□□□□ -2.42
HDAC4P56524 SNORA49-201ENST00000386157 136 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 174.3 ms