Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNA5SP193-201ENST00000410353 107 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 MIRLET7A1-201ENST00000362295 80 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 RNU6-208P-201ENST00000362431 107 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 Y_RNA.30-201ENST00000362572 97 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 RNU6-495P-201ENST00000362995 107 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 Y_RNA.115-201ENST00000363272 98 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 RNU6-478P-201ENST00000363904 110 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 RNA5SP499-201ENST00000363982 119 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 AL157398.1-201ENST00000452981 186 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 RNA5SP395-201ENST00000516567 118 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 U7.6-201ENST00000610841 64 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 U6.81-201ENST00000612550 106 ntBASIC0.42□□□□□ -2.34
PDLIM4P50479 SNORA2A-201ENST00000383885 135 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 SNORD110-201ENST00000408189 75 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 RNU6-1052P-201ENST00000411398 104 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 AL450471.1-201ENST00000447509 127 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 Y_RNA.685-201ENST00000516532 108 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 RNU6-719P-201ENST00000516671 104 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 NAMPTP3-201ENST00000569273 224 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 YWHAEP2-201ENST00000580066 112 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 YWHAEP3-201ENST00000582767 121 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 SNORA70.25-201ENST00000612741 95 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 MIR6755-201ENST00000619993 66 ntBASIC0.41□□□□□ -2.34
PDLIM4P50479 Y_RNA.437-201ENST00000384113 113 ntBASIC0.4□□□□□ -2.35
PDLIM4P50479 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
PDLIM4P50479 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.4□□□□□ -2.35
PDLIM4P50479 RNA5SP330-201ENST00000517096 96 ntBASIC0.4□□□□□ -2.35
PDLIM4P50479 MIR8087-201ENST00000612745 78 ntBASIC0.4□□□□□ -2.35
PDLIM4P50479 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 MIR330-201ENST00000362196 94 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 Y_RNA.94-201ENST00000363068 106 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 RNU6-340P-201ENST00000364005 107 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 Y_RNA.313-201ENST00000365095 103 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 RNU6-652P-201ENST00000365488 107 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 SNORD78.1-201ENST00000390866 65 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 SNORD75.2-201ENST00000408784 58 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 AC006210.1-201ENST00000424882 111 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 MIR4712-201ENST00000583750 82 ntBASIC0.39□□□□□ -2.35
PDLIM4P50479 RNU6-161P-201ENST00000363051 106 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 Y_RNA.125-201ENST00000363371 111 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 RNU6-824P-201ENST00000363724 104 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 RNU6-681P-201ENST00000364012 104 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 RNU6V-201ENST00000384105 107 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 RNU6-380P-201ENST00000410207 107 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 RNU6-303P-201ENST00000517091 106 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 MIR4752-201ENST00000579672 72 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 AL109933.3-201ENST00000619095 188 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 MIR1297-201ENST00000637311 77 ntBASIC0.38□□□□□ -2.35
PDLIM4P50479 SNORD114-4-201ENST00000363962 75 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 Y_RNA.258-201ENST00000364613 105 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 RNU6-279P-201ENST00000391297 101 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 AC074348.1-201ENST00000426503 132 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 HMGN2P22-201ENST00000427588 175 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 RNU6-1108P-201ENST00000516308 104 ntBASIC0.37□□□□□ -2.35
PDLIM4P50479 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.36□□□□□ -2.35
PDLIM4P50479 Y_RNA.12-201ENST00000362393 112 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNU6-1094P-201ENST00000362416 104 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNU6-228P-201ENST00000362700 106 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNU6-54P-201ENST00000365563 107 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 Y_RNA.423-201ENST00000384057 113 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNU6-1124P-201ENST00000384169 107 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNU6-752P-201ENST00000516376 102 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 MIR548AD-201ENST00000584780 82 ntBASIC0.36□□□□□ -2.35
PDLIM4P50479 RNA5SP257-201ENST00000363023 116 ntBASIC0.35□□□□□ -2.35
PDLIM4P50479 Y_RNA.407-201ENST00000383986 113 ntBASIC0.35□□□□□ -2.35
PDLIM4P50479 Y_RNA.681-201ENST00000516445 113 ntBASIC0.35□□□□□ -2.35
PDLIM4P50479 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.35□□□□□ -2.35
PDLIM4P50479 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
PDLIM4P50479 Y_RNA.68-201ENST00000362881 102 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 RNU6-382P-201ENST00000365181 106 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 RNA5SP128-201ENST00000365305 116 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 RNU6-1275P-201ENST00000391087 107 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 SNORD42B-201ENST00000458893 67 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 RNU5B-6P-201ENST00000516765 68 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 uc_338.10-201ENST00000621872 182 ntBASIC0.34□□□□□ -2.36
PDLIM4P50479 RNU6-1327P-201ENST00000365302 105 ntBASIC0.33□□□□□ -2.36
PDLIM4P50479 MIR1255A-201ENST00000408338 113 ntBASIC0.33□□□□□ -2.36
PDLIM4P50479 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
PDLIM4P50479 MIR103A1-201ENST00000362165 78 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 Y_RNA.178-201ENST00000363832 102 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 RNU6-24P-201ENST00000384440 107 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 Y_RNA.532-201ENST00000384590 113 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 MIR501-201ENST00000390204 84 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 RNU6-274P-201ENST00000459566 107 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 RNU6-807P-201ENST00000516805 107 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 MIR4677-201ENST00000584153 80 ntBASIC0.32□□□□□ -2.36
PDLIM4P50479 SNORA9.1-201ENST00000362412 131 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 RNA5SP62-201ENST00000363457 110 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 Y_RNA.371-201ENST00000365591 113 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 MIR760-201ENST00000390220 80 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 RNU6-1232P-201ENST00000516299 86 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 SCARNA17.3-201ENST00000516381 125 ntBASIC0.31□□□□□ -2.36
PDLIM4P50479 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
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