Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.34□□□□□ -2.46
MSH2P43246 RNY4P18-201ENST00000391107 89 ntBASIC-0.34□□□□□ -2.46
MSH2P43246 SNORD42B-201ENST00000458893 67 ntBASIC-0.34□□□□□ -2.46
MSH2P43246 AC026421.1-201ENST00000519101 163 ntBASIC-0.34□□□□□ -2.46
MSH2P43246 RNU4-32P-201ENST00000363404 141 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 SNORA24B-201ENST00000384176 131 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 SNORA18.5-201ENST00000516616 101 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 MIR3666-201ENST00000607845 111 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 U7.3-201ENST00000616123 62 ntBASIC-0.35□□□□□ -2.47
MSH2P43246 MIR655-201ENST00000362159 97 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 RNY4P3-201ENST00000365254 95 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 AL031737.1-201ENST00000450125 223 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 RNU6-162P-201ENST00000516228 103 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 RNU6-406P-201ENST00000516470 107 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 RNU6-158P-201ENST00000517104 100 ntBASIC-0.36□□□□□ -2.47
MSH2P43246 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.37□□□□□ -2.47
MSH2P43246 RNU6-495P-201ENST00000362995 107 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 SNORD90-201ENST00000391145 111 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 RNU4-61P-201ENST00000411243 107 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 MTATP6P29-201ENST00000415057 132 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 MTATP8P2-201ENST00000435212 202 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 MIR6759-201ENST00000638110 65 ntBASIC-0.38□□□□□ -2.47
MSH2P43246 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.39□□□□□ -2.47
MSH2P43246 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.39□□□□□ -2.47
MSH2P43246 IGLVI-20-201ENST00000519296 130 ntBASIC-0.39□□□□□ -2.47
MSH2P43246 MIR450A1-201ENST00000362262 91 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 SNORD114-31-201ENST00000363219 75 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 MIR582-201ENST00000365731 98 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 SNORA49-201ENST00000386157 136 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 MIR548E-201ENST00000408287 88 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 SNORD2-201ENST00000459163 69 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 MIR4263-201ENST00000584745 83 ntBASIC-0.4□□□□□ -2.47
MSH2P43246 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 RNU6-755P-201ENST00000364400 103 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 RNU6-455P-201ENST00000384681 107 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 RNA5SP300-201ENST00000391197 107 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 AP000676.1-201ENST00000533307 52 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 MIR2052-201ENST00000636055 55 ntBASIC-0.42□□□□□ -2.48
MSH2P43246 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.43□□□□□ -2.48
MSH2P43246 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.43□□□□□ -2.48
MSH2P43246 MIR1236-201ENST00000408340 102 ntBASIC-0.43□□□□□ -2.48
MSH2P43246 RNU7-24P-201ENST00000458867 62 ntBASIC-0.43□□□□□ -2.48
MSH2P43246 AC145423.2-201ENST00000610631 239 ntBASIC-0.43□□□□□ -2.48
MSH2P43246 SNORD115-25-201ENST00000362619 82 ntBASIC-0.44□□□□□ -2.48
MSH2P43246 SNORD75.2-201ENST00000408784 58 ntBASIC-0.44□□□□□ -2.48
MSH2P43246 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.44□□□□□ -2.48
MSH2P43246 RNU5F-1-201ENST00000362507 117 ntBASIC-0.45□□□□□ -2.48
MSH2P43246 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.45□□□□□ -2.48
MSH2P43246 MIR9-2-201ENST00000384838 87 ntBASIC-0.45□□□□□ -2.48
MSH2P43246 MIR4796-201ENST00000580742 81 ntBASIC-0.45□□□□□ -2.48
MSH2P43246 MIR4645-201ENST00000583158 77 ntBASIC-0.45□□□□□ -2.48
MSH2P43246 RNU6-215P-201ENST00000365169 102 ntBASIC-0.46□□□□□ -2.48
MSH2P43246 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.46□□□□□ -2.48
MSH2P43246 RNU6-320P-201ENST00000516511 106 ntBASIC-0.46□□□□□ -2.48
MSH2P43246 AL590491.3-201ENST00000610731 82 ntBASIC-0.46□□□□□ -2.48
MSH2P43246 AP001318.4-201ENST00000616637 121 ntBASIC-0.46□□□□□ -2.48
MSH2P43246 MIR4788-201ENST00000639104 80 ntBASIC-0.46□□□□□ -2.48
MSH2P43246 RNU6-900P-201ENST00000384498 102 ntBASIC-0.47□□□□□ -2.48
MSH2P43246 AC097510.1-201ENST00000510945 133 ntBASIC-0.47□□□□□ -2.48
MSH2P43246 SNORD20-201ENST00000384550 80 ntBASIC-0.48□□□□□ -2.49
MSH2P43246 AC006254.2-201ENST00000603259 279 ntBASIC-0.48□□□□□ -2.49
MSH2P43246 SNORD114-28-201ENST00000363610 72 ntBASIC-0.49□□□□□ -2.49
MSH2P43246 snoU13.17-201ENST00000458802 104 ntBASIC-0.49□□□□□ -2.49
MSH2P43246 SNORA40.13-201ENST00000516379 120 ntBASIC-0.49□□□□□ -2.49
MSH2P43246 RNU6-919P-201ENST00000516731 104 ntBASIC-0.49□□□□□ -2.49
MSH2P43246 SNORA63.6-201ENST00000364921 119 ntBASIC-0.5□□□□□ -2.49
MSH2P43246 RNU6-382P-201ENST00000365181 106 ntBASIC-0.5□□□□□ -2.49
MSH2P43246 SNORA40.17-201ENST00000517256 115 ntBASIC-0.5□□□□□ -2.49
MSH2P43246 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.51□□□□□ -2.49
MSH2P43246 SNORA63.4-201ENST00000362763 126 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 RNU6-824P-201ENST00000363724 104 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 RNU6-990P-201ENST00000364385 104 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 RNU7-153P-201ENST00000516455 62 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 MIR5589-201ENST00000579442 60 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 MIR548AI-201ENST00000579940 88 ntBASIC-0.51□□□□□ -2.49
MSH2P43246 RNA5SP275-201ENST00000363936 118 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 SNORD115-27-201ENST00000364430 82 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 MIR519C-201ENST00000385053 87 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.52□□□□□ -2.49
MSH2P43246 RNU7-55P-201ENST00000459426 62 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 RNA5SP66-201ENST00000517178 101 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 MIR4802-201ENST00000581881 80 ntBASIC-0.52□□□□□ -2.49
MSH2P43246 AP001180.6-201ENST00000584918 159 ntBASIC-0.53□□□□□ -2.49
MSH2P43246 MALAT1.1-201ENST00000618249 95 ntBASIC-0.53□□□□□ -2.49
MSH2P43246 MIR4773-1-201ENST00000637203 78 ntBASIC-0.53□□□□□ -2.49
MSH2P43246 RNU6-502P-201ENST00000362419 108 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 RNU6-32P-201ENST00000383948 107 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 RNU6-13P-201ENST00000384248 107 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 RNU6-12P-201ENST00000384604 107 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 RNU6-41P-201ENST00000384741 107 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 AC096531.1-201ENST00000419107 107 ntBASIC-0.54□□□□□ -2.5
MSH2P43246 snoU13.13-201ENST00000458842 104 ntBASIC-0.54□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 179.4 ms