Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 MIR4536-1-201ENST00000583537 88 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 AC103810.7-201ENST00000607821 91 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.39□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.39□□□□□ -2.47
CPSF3Q9UKF6 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.39□□□□□ -2.47
CPSF3Q9UKF6 MIR548Z-201ENST00000584743 97 ntBASIC-0.39□□□□□ -2.47
CPSF3Q9UKF6 MIR655-201ENST00000362159 97 ntBASIC-0.4□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.4□□□□□ -2.47
CPSF3Q9UKF6 SNORD116-21-201ENST00000384507 92 ntBASIC-0.4□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.4□□□□□ -2.47
CPSF3Q9UKF6 MIR4777-201ENST00000583710 86 ntBASIC-0.4□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 RNA5SP98-201ENST00000363158 137 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 RNU6-811P-201ENST00000384069 107 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 RNU6-959P-201ENST00000384671 107 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 RNU6-644P-201ENST00000391155 98 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.41□□□□□ -2.48
CPSF3Q9UKF6 MIR20A-201ENST00000362279 71 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 RNU4-36P-201ENST00000364294 144 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 RNA5SP205-201ENST00000364653 136 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 RNU6-795P-201ENST00000516323 103 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 MIR3666-201ENST00000607845 111 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 AC012531.4-201ENST00000616509 177 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 MIR6759-201ENST00000638110 65 ntBASIC-0.42□□□□□ -2.48
CPSF3Q9UKF6 RNU6-54P-201ENST00000365563 107 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 RNU6-132P-201ENST00000383863 107 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 SNORA19.1-201ENST00000410656 129 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 RNU6-412P-201ENST00000516434 106 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 MIR4645-201ENST00000583158 77 ntBASIC-0.43□□□□□ -2.48
CPSF3Q9UKF6 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.44□□□□□ -2.48
CPSF3Q9UKF6 U3.27-201ENST00000391237 200 ntBASIC-0.44□□□□□ -2.48
CPSF3Q9UKF6 AC244090.1-201ENST00000441884 93 ntBASIC-0.44□□□□□ -2.48
CPSF3Q9UKF6 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.45□□□□□ -2.48
CPSF3Q9UKF6 RNU6-320P-201ENST00000516511 106 ntBASIC-0.45□□□□□ -2.48
CPSF3Q9UKF6 RNA5SP300-201ENST00000391197 107 ntBASIC-0.46□□□□□ -2.48
CPSF3Q9UKF6 RNU6-904P-201ENST00000516206 101 ntBASIC-0.46□□□□□ -2.48
CPSF3Q9UKF6 RNU6-762P-201ENST00000517107 102 ntBASIC-0.46□□□□□ -2.48
CPSF3Q9UKF6 RNU6-81P-201ENST00000365608 104 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 SNORD4B-201ENST00000459083 72 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 FGF7P7-201ENST00000514120 227 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 RNU6-719P-201ENST00000516671 104 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 MIR3064-201ENST00000581130 66 ntBASIC-0.47□□□□□ -2.48
CPSF3Q9UKF6 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.48□□□□□ -2.49
CPSF3Q9UKF6 AC008267.6-201ENST00000441664 139 ntBASIC-0.48□□□□□ -2.49
CPSF3Q9UKF6 MIR8064-201ENST00000612863 90 ntBASIC-0.48□□□□□ -2.49
CPSF3Q9UKF6 AL365222.1-201ENST00000614661 98 ntBASIC-0.48□□□□□ -2.49
CPSF3Q9UKF6 SNORD114-28-201ENST00000363610 72 ntBASIC-0.49□□□□□ -2.49
CPSF3Q9UKF6 SNORA49-201ENST00000386157 136 ntBASIC-0.49□□□□□ -2.49
CPSF3Q9UKF6 SCARNA23-201ENST00000516060 130 ntBASIC-0.49□□□□□ -2.49
CPSF3Q9UKF6 RNU6-455P-201ENST00000384681 107 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 MIR548U-201ENST00000390728 81 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 SNORD42B-201ENST00000458893 67 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 MIR4263-201ENST00000584745 83 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 AC104996.3-201ENST00000590718 94 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 AL590491.3-201ENST00000610731 82 ntBASIC-0.5□□□□□ -2.49
CPSF3Q9UKF6 MIR582-201ENST00000365731 98 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 RNU6-476P-201ENST00000384726 107 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 MIR548M-201ENST00000408260 86 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 RNU6-519P-201ENST00000410590 108 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 MIR4788-201ENST00000639104 80 ntBASIC-0.51□□□□□ -2.49
CPSF3Q9UKF6 SNORA63.2-201ENST00000362603 126 ntBASIC-0.52□□□□□ -2.49
CPSF3Q9UKF6 RNA5SP275-201ENST00000363936 118 ntBASIC-0.52□□□□□ -2.49
CPSF3Q9UKF6 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.52□□□□□ -2.49
CPSF3Q9UKF6 MIR3140-201ENST00000583685 90 ntBASIC-0.52□□□□□ -2.49
CPSF3Q9UKF6 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 MIR9-2-201ENST00000384838 87 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 MIR548E-201ENST00000408287 88 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 AC096531.1-201ENST00000419107 107 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 RNU6-537P-201ENST00000517277 103 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 AP000676.1-201ENST00000533307 52 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 AC145423.2-201ENST00000610631 239 ntBASIC-0.53□□□□□ -2.49
CPSF3Q9UKF6 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 SNORD58A-201ENST00000383875 65 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 RNA5SP292-201ENST00000390974 118 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 RNU6-972P-201ENST00000391208 107 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 MIR5589-201ENST00000579442 60 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 AP001180.6-201ENST00000584918 159 ntBASIC-0.54□□□□□ -2.5
CPSF3Q9UKF6 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.55□□□□□ -2.5
CPSF3Q9UKF6 SNORD114-4-201ENST00000363962 75 ntBASIC-0.55□□□□□ -2.5
CPSF3Q9UKF6 MIR590-201ENST00000385008 97 ntBASIC-0.55□□□□□ -2.5
CPSF3Q9UKF6 RNU6-887P-201ENST00000410660 100 ntBASIC-0.55□□□□□ -2.5
CPSF3Q9UKF6 SNORD14C-201ENST00000365382 88 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 SNORA24B-201ENST00000384176 131 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 MIR1302-5-201ENST00000408164 150 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 AC097510.1-201ENST00000510945 133 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 MIR6129-201ENST00000616087 109 ntBASIC-0.56□□□□□ -2.5
CPSF3Q9UKF6 SNORD115-25-201ENST00000362619 82 ntBASIC-0.57□□□□□ -2.5
CPSF3Q9UKF6 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 244.3 ms