Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SNORD2-201ENST00000459163 69 ntBASIC3.92□□□□□ -1.78
SENP3Q9H4L4 RN7SL499P-201ENST00000481141 276 ntBASIC3.92□□□□□ -1.78
SENP3Q9H4L4 RNA5SP320-201ENST00000516263 124 ntBASIC3.92□□□□□ -1.78
SENP3Q9H4L4 RNU6-56P-201ENST00000516986 93 ntBASIC3.92□□□□□ -1.78
SENP3Q9H4L4 MIR4781-201ENST00000585250 76 ntBASIC3.92□□□□□ -1.78
SENP3Q9H4L4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SENP3Q9H4L4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SENP3Q9H4L4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SENP3Q9H4L4 MIRLET7B-201ENST00000385140 83 ntBASIC3.91□□□□□ -1.78
SENP3Q9H4L4 MIR4713-201ENST00000582691 75 ntBASIC3.91□□□□□ -1.78
SENP3Q9H4L4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SENP3Q9H4L4 RNA5SP274-201ENST00000410484 108 ntBASIC3.9□□□□□ -1.79
SENP3Q9H4L4 SNORD57-201ENST00000448188 72 ntBASIC3.9□□□□□ -1.79
SENP3Q9H4L4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC3.9□□□□□ -1.79
SENP3Q9H4L4 RNU4-53P-201ENST00000410828 140 ntBASIC3.89□□□□□ -1.79
SENP3Q9H4L4 RNU7-170P-201ENST00000459303 61 ntBASIC3.89□□□□□ -1.79
SENP3Q9H4L4 SNORA64.4-201ENST00000516632 81 ntBASIC3.89□□□□□ -1.79
SENP3Q9H4L4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SENP3Q9H4L4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.88□□□□□ -1.79
SENP3Q9H4L4 SNORA26.9-201ENST00000391322 122 ntBASIC3.88□□□□□ -1.79
SENP3Q9H4L4 UQCRHP3-201ENST00000451503 251 ntBASIC3.88□□□□□ -1.79
SENP3Q9H4L4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
SENP3Q9H4L4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
SENP3Q9H4L4 RNU1-52P-201ENST00000384190 164 ntBASIC3.87□□□□□ -1.79
SENP3Q9H4L4 RNA5SP425-201ENST00000410336 112 ntBASIC3.87□□□□□ -1.79
SENP3Q9H4L4 RN7SKP223-201ENST00000410582 62 ntBASIC3.87□□□□□ -1.79
SENP3Q9H4L4 SNORD79.1-201ENST00000516069 84 ntBASIC3.87□□□□□ -1.79
SENP3Q9H4L4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SENP3Q9H4L4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SENP3Q9H4L4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.86□□□□□ -1.79
SENP3Q9H4L4 Y_RNA.355-201ENST00000365462 98 ntBASIC3.86□□□□□ -1.79
SENP3Q9H4L4 RNA5SP21-201ENST00000410917 96 ntBASIC3.86□□□□□ -1.79
SENP3Q9H4L4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SENP3Q9H4L4 AL159169.1-201ENST00000421119 127 ntBASIC3.85□□□□□ -1.79
SENP3Q9H4L4 RNA5SP227-201ENST00000516184 113 ntBASIC3.85□□□□□ -1.79
SENP3Q9H4L4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SENP3Q9H4L4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SENP3Q9H4L4 Y_RNA.321-201ENST00000365149 102 ntBASIC3.83□□□□□ -1.8
SENP3Q9H4L4 AC073476.4-201ENST00000628409 72 ntBASIC3.83□□□□□ -1.8
SENP3Q9H4L4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SENP3Q9H4L4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SENP3Q9H4L4 MIR9-1-201ENST00000385198 89 ntBASIC3.82□□□□□ -1.8
SENP3Q9H4L4 AC079804.2-201ENST00000490376 200 ntBASIC3.82□□□□□ -1.8
SENP3Q9H4L4 AL353803.5-201ENST00000599815 141 ntBASIC3.82□□□□□ -1.8
SENP3Q9H4L4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SENP3Q9H4L4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC3.81□□□□□ -1.8
SENP3Q9H4L4 RNU6-782P-201ENST00000516852 104 ntBASIC3.81□□□□□ -1.8
SENP3Q9H4L4 MIR221-201ENST00000385135 110 ntBASIC3.8□□□□□ -1.8
SENP3Q9H4L4 RNU7-88P-201ENST00000458752 63 ntBASIC3.8□□□□□ -1.8
SENP3Q9H4L4 MIR3186-201ENST00000577404 85 ntBASIC3.8□□□□□ -1.8
SENP3Q9H4L4 MIR4432-201ENST00000581823 84 ntBASIC3.8□□□□□ -1.8
SENP3Q9H4L4 MIR6828-201ENST00000636181 60 ntBASIC3.8□□□□□ -1.8
SENP3Q9H4L4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SENP3Q9H4L4 MIR489-201ENST00000384923 84 ntBASIC3.79□□□□□ -1.8
SENP3Q9H4L4 U7.5-201ENST00000517224 61 ntBASIC3.79□□□□□ -1.8
SENP3Q9H4L4 AC108676.2-201ENST00000605225 163 ntBASIC3.79□□□□□ -1.8
SENP3Q9H4L4 SNORA49-201ENST00000386157 136 ntBASIC3.78□□□□□ -1.8
SENP3Q9H4L4 SNORD63.1-201ENST00000516178 80 ntBASIC3.78□□□□□ -1.8
SENP3Q9H4L4 RNU1-40P-201ENST00000516816 164 ntBASIC3.78□□□□□ -1.8
SENP3Q9H4L4 RNU1-97P-201ENST00000516872 164 ntBASIC3.78□□□□□ -1.8
SENP3Q9H4L4 SNORA46-201ENST00000384762 135 ntBASIC3.77□□□□□ -1.81
SENP3Q9H4L4 RNU6-1053P-201ENST00000515930 101 ntBASIC3.77□□□□□ -1.81
SENP3Q9H4L4 RNU6-1110P-201ENST00000516462 101 ntBASIC3.77□□□□□ -1.81
SENP3Q9H4L4 RNU4-52P-201ENST00000384209 138 ntBASIC3.76□□□□□ -1.81
SENP3Q9H4L4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC3.76□□□□□ -1.81
SENP3Q9H4L4 MIR3170-201ENST00000582699 77 ntBASIC3.76□□□□□ -1.81
SENP3Q9H4L4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SENP3Q9H4L4 RNU4-62P-201ENST00000410125 130 ntBASIC3.75□□□□□ -1.81
SENP3Q9H4L4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SENP3Q9H4L4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SENP3Q9H4L4 SNORD114-1-201ENST00000362705 72 ntBASIC3.74□□□□□ -1.81
SENP3Q9H4L4 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.74□□□□□ -1.81
SENP3Q9H4L4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
SENP3Q9H4L4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
SENP3Q9H4L4 SNORD23.1-201ENST00000408212 104 ntBASIC3.73□□□□□ -1.81
SENP3Q9H4L4 RPS29P6-201ENST00000438196 145 ntBASIC3.73□□□□□ -1.81
SENP3Q9H4L4 SNORA70.25-201ENST00000612741 95 ntBASIC3.73□□□□□ -1.81
SENP3Q9H4L4 SNORA50A-202ENST00000629536 136 ntBASIC3.73□□□□□ -1.81
SENP3Q9H4L4 MIR4426-201ENST00000640330 63 ntBASIC3.73□□□□□ -1.81
SENP3Q9H4L4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SENP3Q9H4L4 MIR30A-201ENST00000385092 71 ntBASIC3.72□□□□□ -1.81
SENP3Q9H4L4 SNORD105-201ENST00000386910 85 ntBASIC3.72□□□□□ -1.81
SENP3Q9H4L4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
SENP3Q9H4L4 SNORD89-201ENST00000390981 114 ntBASIC3.71□□□□□ -1.82
SENP3Q9H4L4 HMGN2P22-201ENST00000427588 175 ntBASIC3.71□□□□□ -1.82
SENP3Q9H4L4 RNU6-1174P-201ENST00000517278 101 ntBASIC3.71□□□□□ -1.82
SENP3Q9H4L4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.7□□□□□ -1.82
SENP3Q9H4L4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.7□□□□□ -1.82
SENP3Q9H4L4 RNU6-502P-201ENST00000362419 108 ntBASIC3.69□□□□□ -1.82
SENP3Q9H4L4 MIR3612-201ENST00000579753 87 ntBASIC3.69□□□□□ -1.82
SENP3Q9H4L4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.68□□□□□ -1.82
SENP3Q9H4L4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.68□□□□□ -1.82
SENP3Q9H4L4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SENP3Q9H4L4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
SENP3Q9H4L4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
SENP3Q9H4L4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.67□□□□□ -1.82
SENP3Q9H4L4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.67□□□□□ -1.82
SENP3Q9H4L4 SNORA67.1-201ENST00000364749 141 ntBASIC3.66□□□□□ -1.82
SENP3Q9H4L4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
SENP3Q9H4L4 SNORD114-29-201ENST00000364819 70 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 226.1 ms