Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-810P-201ENST00000364001 107 ntBASIC1.93□□□□□ -2.1
NPAS3Q8IXF0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
NPAS3Q8IXF0 SNORD23.1-201ENST00000408212 104 ntBASIC1.93□□□□□ -2.1
NPAS3Q8IXF0 RNU6-165P-201ENST00000517170 99 ntBASIC1.93□□□□□ -2.1
NPAS3Q8IXF0 RNU6-838P-201ENST00000363399 108 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 MIR520F-201ENST00000384824 87 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 MIR644A-201ENST00000385262 94 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 SNORA31.2-201ENST00000516019 134 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 MIR4448-201ENST00000584360 86 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 snoU13.31-201ENST00000607291 104 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 MIR8081-201ENST00000611533 95 ntBASIC1.92□□□□□ -2.1
NPAS3Q8IXF0 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.91□□□□□ -2.1
NPAS3Q8IXF0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
NPAS3Q8IXF0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.91□□□□□ -2.1
NPAS3Q8IXF0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
NPAS3Q8IXF0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
NPAS3Q8IXF0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
NPAS3Q8IXF0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
NPAS3Q8IXF0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.1
NPAS3Q8IXF0 MIR378A-201ENST00000362177 66 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 SNORD114-4-201ENST00000363962 75 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 SNORA25.8-201ENST00000364831 128 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 Y_RNA.355-201ENST00000365462 98 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 RNU7-74P-201ENST00000459104 62 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 MIR8074-201ENST00000615081 81 ntBASIC1.9□□□□□ -2.11
NPAS3Q8IXF0 AL356379.1-201ENST00000414105 126 ntBASIC1.89□□□□□ -2.11
NPAS3Q8IXF0 MIR3937-201ENST00000580135 106 ntBASIC1.89□□□□□ -2.11
NPAS3Q8IXF0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 SNORA15B-2-201ENST00000384058 135 ntBASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 SNORA15B-1-201ENST00000384334 135 ntBASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 SNORA40B-201ENST00000385573 128 ntBASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 MIR934-201ENST00000401241 83 ntBASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.88□□□□□ -2.11
NPAS3Q8IXF0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 RNU1-141P-201ENST00000364623 158 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 MIR17-201ENST00000385012 84 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 MIR527-201ENST00000385244 85 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 RNA5SP212-201ENST00000391223 107 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 RNA5SP364-201ENST00000516938 78 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 AC244669.1-204ENST00000621564 178 ntBASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
NPAS3Q8IXF0 RNU6-986P-201ENST00000363133 102 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 SNORA7.1-201ENST00000363750 139 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 RNU6-716P-201ENST00000365621 103 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 MIR489-201ENST00000384923 84 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 RNU4-62P-201ENST00000410125 130 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 AC079140.2-201ENST00000506193 142 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 MIR4255-201ENST00000579351 72 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 uc_338.20-201ENST00000621563 178 ntBASIC1.86□□□□□ -2.11
NPAS3Q8IXF0 MIR1-1-201ENST00000362147 71 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 Y_RNA.224-201ENST00000364308 111 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 SNORD1A-201ENST00000364968 72 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 SNORD116-16-201ENST00000384533 92 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 MIR758-201ENST00000390227 88 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 Y_RNA.633-201ENST00000459107 95 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 RNU6-518P-201ENST00000516056 96 ntBASIC1.85□□□□□ -2.11
NPAS3Q8IXF0 SNORD28-201ENST00000384706 75 ntBASIC1.84□□□□□ -2.11
NPAS3Q8IXF0 RNU6-1250P-201ENST00000391218 107 ntBASIC1.84□□□□□ -2.11
NPAS3Q8IXF0 RNU6-172P-201ENST00000411000 93 ntBASIC1.84□□□□□ -2.11
NPAS3Q8IXF0 CYP3A54P-201ENST00000566950 75 ntBASIC1.84□□□□□ -2.11
NPAS3Q8IXF0 MIR4303-201ENST00000581299 66 ntBASIC1.84□□□□□ -2.11
NPAS3Q8IXF0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 SNORA63.6-201ENST00000364921 119 ntBASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 SNORD41.1-201ENST00000391000 69 ntBASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 SNORA67.5-201ENST00000391036 107 ntBASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 RNU6-321P-201ENST00000410912 106 ntBASIC1.83□□□□□ -2.12
NPAS3Q8IXF0 SNORA16.1-201ENST00000364597 132 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 MIR582-201ENST00000365731 98 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 RNU6-1065P-201ENST00000384513 106 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 RNU6-269P-201ENST00000391077 97 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 AP1B1P2-201ENST00000416196 106 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 RNA5SP484-201ENST00000458857 111 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 snoU13.9-201ENST00000458927 103 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 RNA5SP233-201ENST00000459153 113 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 MIR4490-201ENST00000582647 84 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 AL359821.1-201ENST00000605519 182 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 MIR502-201ENST00000606349 86 ntBASIC1.82□□□□□ -2.12
NPAS3Q8IXF0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 RNU6-247P-201ENST00000362636 107 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 Y_RNA.282-201ENST00000364793 102 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 MIR652-201ENST00000385278 98 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 AL591704.2-201ENST00000421658 181 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 AL512310.8-201ENST00000550183 120 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 MIR8070-201ENST00000616510 88 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 U6.96-201ENST00000636425 70 ntBASIC1.81□□□□□ -2.12
NPAS3Q8IXF0 MIR302D-201ENST00000362275 68 ntBASIC1.8□□□□□ -2.12
NPAS3Q8IXF0 Y_RNA.74-201ENST00000362911 99 ntBASIC1.8□□□□□ -2.12
NPAS3Q8IXF0 SNORD1B-201ENST00000363091 84 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 RNA5SP489-201ENST00000410986 109 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 RN7SKP88-201ENST00000516847 250 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 272.2 ms