Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR8070-201ENST00000616510 88 ntBASIC1.61□□□□□ -2.15
MSX1P28360 RNU6-260P-201ENST00000384092 107 ntBASIC1.6□□□□□ -2.15
MSX1P28360 RNU6V-201ENST00000384105 107 ntBASIC1.6□□□□□ -2.15
MSX1P28360 SNORA67.5-201ENST00000391036 107 ntBASIC1.6□□□□□ -2.15
MSX1P28360 RNU4-37P-201ENST00000410214 84 ntBASIC1.6□□□□□ -2.15
MSX1P28360 SNORD42B-201ENST00000458893 67 ntBASIC1.6□□□□□ -2.15
MSX1P28360 MIR4255-201ENST00000579351 72 ntBASIC1.6□□□□□ -2.15
MSX1P28360 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
MSX1P28360 SNORA25-201ENST00000384384 134 ntBASIC1.59□□□□□ -2.15
MSX1P28360 MIR7-2-201ENST00000384970 110 ntBASIC1.59□□□□□ -2.15
MSX1P28360 SNORD89-201ENST00000390981 114 ntBASIC1.59□□□□□ -2.15
MSX1P28360 RNU4-62P-201ENST00000410125 130 ntBASIC1.59□□□□□ -2.15
MSX1P28360 SNORD105-201ENST00000386910 85 ntBASIC1.58□□□□□ -2.16
MSX1P28360 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.58□□□□□ -2.16
MSX1P28360 Y_RNA.375-201ENST00000365625 101 ntBASIC1.57□□□□□ -2.16
MSX1P28360 MT-TY-201ENST00000387409 66 ntBASIC1.57□□□□□ -2.16
MSX1P28360 MIR548L-201ENST00000408303 86 ntBASIC1.57□□□□□ -2.16
MSX1P28360 AP1B1P2-201ENST00000416196 106 ntBASIC1.57□□□□□ -2.16
MSX1P28360 FABP5P4-201ENST00000437203 171 ntBASIC1.57□□□□□ -2.16
MSX1P28360 MIR4285-201ENST00000581001 85 ntBASIC1.57□□□□□ -2.16
MSX1P28360 MIR502-201ENST00000606349 86 ntBASIC1.57□□□□□ -2.16
MSX1P28360 RNU6-645P-201ENST00000364649 106 ntBASIC1.56□□□□□ -2.16
MSX1P28360 RNU6-997P-201ENST00000384725 107 ntBASIC1.56□□□□□ -2.16
MSX1P28360 U7.7-201ENST00000459276 60 ntBASIC1.56□□□□□ -2.16
MSX1P28360 RNU6-542P-201ENST00000516405 103 ntBASIC1.56□□□□□ -2.16
MSX1P28360 MIR4460-201ENST00000577862 86 ntBASIC1.56□□□□□ -2.16
MSX1P28360 BX248123.2-201ENST00000606318 124 ntBASIC1.56□□□□□ -2.16
MSX1P28360 RNA5SP327-201ENST00000362494 101 ntBASIC1.55□□□□□ -2.16
MSX1P28360 SNORD18A-201ENST00000363753 72 ntBASIC1.55□□□□□ -2.16
MSX1P28360 Y_RNA.224-201ENST00000364308 111 ntBASIC1.55□□□□□ -2.16
MSX1P28360 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
MSX1P28360 MIR4303-201ENST00000581299 66 ntBASIC1.55□□□□□ -2.16
MSX1P28360 SNORA2.1-201ENST00000363089 137 ntBASIC1.54□□□□□ -2.16
MSX1P28360 RNU6-726P-201ENST00000364680 107 ntBASIC1.54□□□□□ -2.16
MSX1P28360 MIR489-201ENST00000384923 84 ntBASIC1.54□□□□□ -2.16
MSX1P28360 RNA5SP47-201ENST00000517230 109 ntBASIC1.54□□□□□ -2.16
MSX1P28360 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
MSX1P28360 SNORD48-201ENST00000364953 64 ntBASIC1.53□□□□□ -2.16
MSX1P28360 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
MSX1P28360 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.53□□□□□ -2.16
MSX1P28360 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.53□□□□□ -2.16
MSX1P28360 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
MSX1P28360 RNU1-141P-201ENST00000364623 158 ntBASIC1.52□□□□□ -2.17
MSX1P28360 snoU13.18-201ENST00000459483 104 ntBASIC1.52□□□□□ -2.17
MSX1P28360 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
MSX1P28360 MIR633-201ENST00000384821 98 ntBASIC1.51□□□□□ -2.17
MSX1P28360 SNORA40.17-201ENST00000517256 115 ntBASIC1.51□□□□□ -2.17
MSX1P28360 MIR3678-201ENST00000578455 94 ntBASIC1.51□□□□□ -2.17
MSX1P28360 AC092634.7-201ENST00000621022 103 ntBASIC1.51□□□□□ -2.17
MSX1P28360 RNU6-990P-201ENST00000364385 104 ntBASIC1.5□□□□□ -2.17
MSX1P28360 RNU6-716P-201ENST00000365621 103 ntBASIC1.5□□□□□ -2.17
MSX1P28360 MIR19B1-201ENST00000384829 87 ntBASIC1.5□□□□□ -2.17
MSX1P28360 RNU7-95P-201ENST00000459222 64 ntBASIC1.5□□□□□ -2.17
MSX1P28360 RNU1-92P-201ENST00000517017 135 ntBASIC1.5□□□□□ -2.17
MSX1P28360 SNORD114-4-201ENST00000363962 75 ntBASIC1.49□□□□□ -2.17
MSX1P28360 MIR573-201ENST00000384964 99 ntBASIC1.49□□□□□ -2.17
MSX1P28360 AC079150.2-201ENST00000443733 78 ntBASIC1.49□□□□□ -2.17
MSX1P28360 MIR6739-201ENST00000622461 75 ntBASIC1.49□□□□□ -2.17
MSX1P28360 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
MSX1P28360 SNORA8.2-201ENST00000384372 139 ntBASIC1.48□□□□□ -2.17
MSX1P28360 RNA5SP147-201ENST00000516493 109 ntBASIC1.48□□□□□ -2.17
MSX1P28360 RNU6-656P-201ENST00000516785 107 ntBASIC1.48□□□□□ -2.17
MSX1P28360 SCARNA16.5-201ENST00000517114 183 ntBASIC1.48□□□□□ -2.17
MSX1P28360 MIR3612-201ENST00000579753 87 ntBASIC1.48□□□□□ -2.17
MSX1P28360 Y_RNA.250-201ENST00000364542 110 ntBASIC1.47□□□□□ -2.17
MSX1P28360 MIR200A-201ENST00000384875 90 ntBASIC1.47□□□□□ -2.17
MSX1P28360 RNU6-269P-201ENST00000391077 97 ntBASIC1.47□□□□□ -2.17
MSX1P28360 RNA5SP215-201ENST00000363440 122 ntBASIC1.46□□□□□ -2.18
MSX1P28360 SNORA25.5-201ENST00000363782 126 ntBASIC1.46□□□□□ -2.18
MSX1P28360 SCARNA21.1-201ENST00000515996 128 ntBASIC1.46□□□□□ -2.18
MSX1P28360 AC018659.1-201ENST00000551083 169 ntBASIC1.46□□□□□ -2.18
MSX1P28360 SNORD53B-201ENST00000577887 78 ntBASIC1.46□□□□□ -2.18
MSX1P28360 Y_RNA.327-201ENST00000365201 102 ntBASIC1.45□□□□□ -2.18
MSX1P28360 SNORD124-201ENST00000459577 104 ntBASIC1.45□□□□□ -2.18
MSX1P28360 RNU5B-6P-201ENST00000516765 68 ntBASIC1.45□□□□□ -2.18
MSX1P28360 AC025627.3-201ENST00000582078 182 ntBASIC1.45□□□□□ -2.18
MSX1P28360 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
MSX1P28360 RNU6-614P-201ENST00000384369 107 ntBASIC1.44□□□□□ -2.18
MSX1P28360 MIR517C-201ENST00000385103 95 ntBASIC1.44□□□□□ -2.18
MSX1P28360 RNA5SP299-201ENST00000391203 116 ntBASIC1.44□□□□□ -2.18
MSX1P28360 RNA5SP484-201ENST00000458857 111 ntBASIC1.44□□□□□ -2.18
MSX1P28360 RNU6-1089P-201ENST00000516473 104 ntBASIC1.44□□□□□ -2.18
MSX1P28360 U6.59-201ENST00000615686 107 ntBASIC1.44□□□□□ -2.18
MSX1P28360 RNA5SP192-201ENST00000364404 120 ntBASIC1.43□□□□□ -2.18
MSX1P28360 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.43□□□□□ -2.18
MSX1P28360 RNU6-940P-201ENST00000363433 104 ntBASIC1.42□□□□□ -2.18
MSX1P28360 RNU6-392P-201ENST00000364926 101 ntBASIC1.42□□□□□ -2.18
MSX1P28360 RNA5SP363-201ENST00000365072 115 ntBASIC1.42□□□□□ -2.18
MSX1P28360 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
MSX1P28360 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.42□□□□□ -2.18
MSX1P28360 MIR6734-201ENST00000621166 68 ntBASIC1.42□□□□□ -2.18
MSX1P28360 AL162376.1-201ENST00000624117 175 ntBASIC1.42□□□□□ -2.18
MSX1P28360 MIR6828-201ENST00000636181 60 ntBASIC1.42□□□□□ -2.18
MSX1P28360 RNU1-42P-201ENST00000364033 160 ntBASIC1.41□□□□□ -2.18
MSX1P28360 RNU6-1335P-201ENST00000365426 107 ntBASIC1.41□□□□□ -2.18
MSX1P28360 RNU6-1162P-201ENST00000384443 104 ntBASIC1.41□□□□□ -2.18
MSX1P28360 RNU6-141P-201ENST00000410499 105 ntBASIC1.41□□□□□ -2.18
MSX1P28360 MIR466-201ENST00000580653 84 ntBASIC1.41□□□□□ -2.18
MSX1P28360 RNU6-42P-201ENST00000384165 107 ntBASIC1.4□□□□□ -2.19
MSX1P28360 SNORA67.6-201ENST00000391093 99 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms