Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AC006210.1-201ENST00000424882 111 ntBASIC0.32□□□□□ -2.36
MMP3P08254 SNORD4B-201ENST00000459083 72 ntBASIC0.32□□□□□ -2.36
MMP3P08254 SNORA40.13-201ENST00000516379 120 ntBASIC0.32□□□□□ -2.36
MMP3P08254 SNORD116-10-201ENST00000363791 102 ntBASIC0.31□□□□□ -2.36
MMP3P08254 SNORA2A-201ENST00000383885 135 ntBASIC0.31□□□□□ -2.36
MMP3P08254 Y_RNA.677-201ENST00000516401 85 ntBASIC0.31□□□□□ -2.36
MMP3P08254 RNU6-158P-201ENST00000517104 100 ntBASIC0.31□□□□□ -2.36
MMP3P08254 RNU4-32P-201ENST00000363404 141 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU6-509P-201ENST00000363519 107 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU6-905P-201ENST00000384434 107 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNA5SP89-201ENST00000410300 108 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU7-74P-201ENST00000459104 62 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU6-863P-201ENST00000515989 104 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU6-168P-201ENST00000516189 101 ntBASIC0.3□□□□□ -2.36
MMP3P08254 MALAT1.1-201ENST00000618249 95 ntBASIC0.3□□□□□ -2.36
MMP3P08254 MIR499B-201ENST00000636498 73 ntBASIC0.3□□□□□ -2.36
MMP3P08254 RNU1-141P-201ENST00000364623 158 ntBASIC0.29□□□□□ -2.36
MMP3P08254 MIR488-201ENST00000365739 83 ntBASIC0.29□□□□□ -2.36
MMP3P08254 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
MMP3P08254 SNORD110-201ENST00000408189 75 ntBASIC0.29□□□□□ -2.36
MMP3P08254 RNA5SP395-201ENST00000516567 118 ntBASIC0.29□□□□□ -2.36
MMP3P08254 AC073869.9-201ENST00000641610 120 ntBASIC0.29□□□□□ -2.36
MMP3P08254 Y_RNA.239-201ENST00000364444 113 ntBASIC0.28□□□□□ -2.36
MMP3P08254 MIR451A-201ENST00000385059 72 ntBASIC0.28□□□□□ -2.36
MMP3P08254 RNA5SP292-201ENST00000390974 118 ntBASIC0.28□□□□□ -2.36
MMP3P08254 RNU6-935P-201ENST00000410371 100 ntBASIC0.28□□□□□ -2.36
MMP3P08254 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
MMP3P08254 RNU6-1057P-201ENST00000517162 102 ntBASIC0.28□□□□□ -2.36
MMP3P08254 MIR3064-201ENST00000581130 66 ntBASIC0.28□□□□□ -2.36
MMP3P08254 MIR4473-201ENST00000583731 91 ntBASIC0.28□□□□□ -2.36
MMP3P08254 MIR6718-201ENST00000616153 80 ntBASIC0.28□□□□□ -2.36
MMP3P08254 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
MMP3P08254 RNU6-811P-201ENST00000384069 107 ntBASIC0.27□□□□□ -2.37
MMP3P08254 RNY1P7-201ENST00000384743 110 ntBASIC0.27□□□□□ -2.37
MMP3P08254 MIR501-201ENST00000390204 84 ntBASIC0.27□□□□□ -2.37
MMP3P08254 AC093423.1-201ENST00000440817 142 ntBASIC0.27□□□□□ -2.37
MMP3P08254 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
MMP3P08254 MIR4460-201ENST00000577862 86 ntBASIC0.27□□□□□ -2.37
MMP3P08254 AC104996.3-201ENST00000590718 94 ntBASIC0.27□□□□□ -2.37
MMP3P08254 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.27□□□□□ -2.37
MMP3P08254 MIR2052-201ENST00000636055 55 ntBASIC0.27□□□□□ -2.37
MMP3P08254 RNA5SP128-201ENST00000365305 116 ntBASIC0.26□□□□□ -2.37
MMP3P08254 RNU6-1052P-201ENST00000411398 104 ntBASIC0.26□□□□□ -2.37
MMP3P08254 HMGN2P22-201ENST00000427588 175 ntBASIC0.26□□□□□ -2.37
MMP3P08254 FGF7P7-201ENST00000514120 227 ntBASIC0.26□□□□□ -2.37
MMP3P08254 RNU6-719P-201ENST00000516671 104 ntBASIC0.26□□□□□ -2.37
MMP3P08254 AC069113.3-201ENST00000521019 150 ntBASIC0.26□□□□□ -2.37
MMP3P08254 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.26□□□□□ -2.37
MMP3P08254 SNORA9.1-201ENST00000362412 131 ntBASIC0.25□□□□□ -2.37
MMP3P08254 MIR548U-201ENST00000390728 81 ntBASIC0.25□□□□□ -2.37
MMP3P08254 RNU6-127P-201ENST00000390897 107 ntBASIC0.25□□□□□ -2.37
MMP3P08254 RNA5SP285-201ENST00000516619 119 ntBASIC0.25□□□□□ -2.37
MMP3P08254 RNU5B-6P-201ENST00000516765 68 ntBASIC0.25□□□□□ -2.37
MMP3P08254 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.25□□□□□ -2.37
MMP3P08254 Y_RNA.491-201ENST00000384417 107 ntBASIC0.24□□□□□ -2.37
MMP3P08254 MIR643-201ENST00000385267 97 ntBASIC0.24□□□□□ -2.37
MMP3P08254 SNORD90-201ENST00000391145 111 ntBASIC0.24□□□□□ -2.37
MMP3P08254 YWHAEP2-201ENST00000580066 112 ntBASIC0.24□□□□□ -2.37
MMP3P08254 MIR5706-201ENST00000579841 80 ntBASIC0.23□□□□□ -2.37
MMP3P08254 MIR3140-201ENST00000583685 90 ntBASIC0.23□□□□□ -2.37
MMP3P08254 SNORD115-27-201ENST00000364430 82 ntBASIC0.22□□□□□ -2.37
MMP3P08254 RNU6-1131P-201ENST00000364955 107 ntBASIC0.22□□□□□ -2.37
MMP3P08254 RNU6-35P-201ENST00000384530 107 ntBASIC0.22□□□□□ -2.37
MMP3P08254 SNORA18.5-201ENST00000516616 101 ntBASIC0.22□□□□□ -2.37
MMP3P08254 RNU6V-201ENST00000384105 107 ntBASIC0.21□□□□□ -2.38
MMP3P08254 MT-TY-201ENST00000387409 66 ntBASIC0.21□□□□□ -2.38
MMP3P08254 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.21□□□□□ -2.38
MMP3P08254 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
MMP3P08254 MIR548AE1-201ENST00000583292 70 ntBASIC0.21□□□□□ -2.38
MMP3P08254 MIR4677-201ENST00000584153 80 ntBASIC0.21□□□□□ -2.38
MMP3P08254 AC069503.3-201ENST00000618674 145 ntBASIC0.21□□□□□ -2.38
MMP3P08254 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.2□□□□□ -2.38
MMP3P08254 RNA5SP299-201ENST00000391203 116 ntBASIC0.2□□□□□ -2.38
MMP3P08254 RNU7-153P-201ENST00000516455 62 ntBASIC0.2□□□□□ -2.38
MMP3P08254 RNA5SP476-201ENST00000516613 103 ntBASIC0.2□□□□□ -2.38
MMP3P08254 Y_RNA.125-201ENST00000363371 111 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-54P-201ENST00000365563 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-49P-201ENST00000384256 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNY4P30-201ENST00000410216 95 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-848P-201ENST00000515948 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-617P-201ENST00000516147 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-473P-201ENST00000516164 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-1049P-201ENST00000516414 107 ntBASIC0.19□□□□□ -2.38
MMP3P08254 RNU6-762P-201ENST00000517107 102 ntBASIC0.19□□□□□ -2.38
MMP3P08254 MIR548AD-201ENST00000584780 82 ntBASIC0.19□□□□□ -2.38
MMP3P08254 U7.6-201ENST00000610841 64 ntBASIC0.19□□□□□ -2.38
MMP3P08254 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.18□□□□□ -2.38
MMP3P08254 Y_RNA.220-201ENST00000364244 109 ntBASIC0.18□□□□□ -2.38
MMP3P08254 RNU6-402P-201ENST00000410678 103 ntBASIC0.18□□□□□ -2.38
MMP3P08254 SNORA25.13-201ENST00000516395 103 ntBASIC0.18□□□□□ -2.38
MMP3P08254 MIR5190-201ENST00000581537 80 ntBASIC0.18□□□□□ -2.38
MMP3P08254 MIR4668-201ENST00000582284 70 ntBASIC0.18□□□□□ -2.38
MMP3P08254 MIR548O2-201ENST00000616090 70 ntBASIC0.18□□□□□ -2.38
MMP3P08254 RNU6-1051P-201ENST00000365471 102 ntBASIC0.17□□□□□ -2.38
MMP3P08254 MIR516B1-201ENST00000385211 90 ntBASIC0.17□□□□□ -2.38
MMP3P08254 RNU6-267P-201ENST00000516714 103 ntBASIC0.17□□□□□ -2.38
MMP3P08254 AC104408.1-201ENST00000605241 170 ntBASIC0.17□□□□□ -2.38
MMP3P08254 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
MMP3P08254 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
MMP3P08254 MIR4796-201ENST00000580742 81 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms