Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC096720.1-201ENST00000604441 183 ntBASIC-0.35□□□□□ -2.47
RPUSD4Q96CM3 MIR4788-201ENST00000639104 80 ntBASIC-0.35□□□□□ -2.47
RPUSD4Q96CM3 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 RNA5SP275-201ENST00000363936 118 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 MIR539-201ENST00000365690 78 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 MIR214-201ENST00000385214 110 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 AC096531.1-201ENST00000419107 107 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 AL161932.1-201ENST00000437408 146 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 RNU6-772P-201ENST00000516042 105 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.36□□□□□ -2.47
RPUSD4Q96CM3 RNU6-664P-201ENST00000362381 107 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 SNORD101-201ENST00000384027 73 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 RNU6-257P-201ENST00000410238 98 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 SNORD126-201ENST00000459475 77 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 MIR4439-201ENST00000583746 80 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 MIR4263-201ENST00000584745 83 ntBASIC-0.37□□□□□ -2.47
RPUSD4Q96CM3 RNA5SP98-201ENST00000363158 137 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 MIR577-201ENST00000385196 96 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 RNA5SP272-201ENST00000516095 111 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 RNA5SP480-201ENST00000516840 109 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 MIR4696-201ENST00000581431 70 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 AC145423.2-201ENST00000610631 239 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 MIR548O2-201ENST00000616090 70 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 MIR2909-201ENST00000617113 69 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 AL109933.3-201ENST00000619095 188 ntBASIC-0.38□□□□□ -2.47
RPUSD4Q96CM3 RNU6-154P-201ENST00000384306 106 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 SNORA49-201ENST00000386157 136 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 RNU6-935P-201ENST00000410371 100 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 MIR4432-201ENST00000581823 84 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.39□□□□□ -2.47
RPUSD4Q96CM3 AL157777.2-201ENST00000258070 137 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 MIR20A-201ENST00000362279 71 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 RNY3P2-201ENST00000362918 102 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 RNU6-832P-201ENST00000363319 107 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 SNORD14C-201ENST00000365382 88 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 AC244090.1-201ENST00000441884 93 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 AC114755.3-201ENST00000481111 251 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 AC097510.1-201ENST00000510945 133 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
RPUSD4Q96CM3 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 SNORD56B-201ENST00000384713 71 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 MIR9-2-201ENST00000384838 87 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 U3.27-201ENST00000391237 200 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 RNU6-284P-201ENST00000411105 106 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 snoU13.11-201ENST00000459219 104 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 RNU6-75P-201ENST00000515944 104 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 RNU6-255P-201ENST00000516957 105 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 AL035470.1-201ENST00000622571 220 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 MIR3914-2-201ENST00000637339 95 ntBASIC-0.41□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.42□□□□□ -2.48
RPUSD4Q96CM3 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.42□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.43□□□□□ -2.48
RPUSD4Q96CM3 SNORD50.2-201ENST00000365465 70 ntBASIC-0.43□□□□□ -2.48
RPUSD4Q96CM3 RNU6-80P-201ENST00000384195 107 ntBASIC-0.43□□□□□ -2.48
RPUSD4Q96CM3 AC068339.1-201ENST00000526965 141 ntBASIC-0.43□□□□□ -2.48
RPUSD4Q96CM3 RNU6-86P-201ENST00000606534 107 ntBASIC-0.43□□□□□ -2.48
RPUSD4Q96CM3 RNA5SP457-201ENST00000363657 124 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 RNU6-455P-201ENST00000384681 107 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 RPS29P8-201ENST00000445109 171 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 MIR4280-201ENST00000582178 76 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 MIR548AZ-201ENST00000616567 95 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 AL391099.1-201ENST00000624635 187 ntBASIC-0.44□□□□□ -2.48
RPUSD4Q96CM3 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 MIR329-2-201ENST00000385029 84 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 MIR652-201ENST00000385278 98 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 RNU7-107P-201ENST00000459121 61 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 U6.95-201ENST00000636931 70 ntBASIC-0.45□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 MIR582-201ENST00000365731 98 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 AL445193.1-201ENST00000441183 141 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 SNORD2-201ENST00000459163 69 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 MIR5009-201ENST00000578736 100 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 AC090425.1-201ENST00000610007 140 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 AC025521.1-201ENST00000621624 286 ntBASIC-0.46□□□□□ -2.48
RPUSD4Q96CM3 SNORD45B-201ENST00000364617 72 ntBASIC-0.47□□□□□ -2.48
RPUSD4Q96CM3 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.47□□□□□ -2.48
RPUSD4Q96CM3 snoU13.13-201ENST00000458842 104 ntBASIC-0.47□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 206.1 ms