Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC108019.1-201ENST00000512540 175 ntBASIC-2.12□□□□□ -2.75
USP54Q70EL1 RNU7-6P-201ENST00000516845 62 ntBASIC-2.12□□□□□ -2.75
USP54Q70EL1 RNU6-818P-201ENST00000364837 108 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 MTND1P29-201ENST00000448112 647 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 SNORD2.1-201ENST00000458762 69 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 SCARNA24.2-201ENST00000516968 130 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 AL137067.1-201ENST00000615933 120 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 MTND4LP32-201ENST00000636111 270 ntBASIC-2.13□□□□□ -2.75
USP54Q70EL1 RNA5SP26-201ENST00000362406 119 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 SNORD38.1-201ENST00000363863 68 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 RNU6-260P-201ENST00000384092 107 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 MTATP6P21-201ENST00000440681 189 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 AL353691.2-201ENST00000443795 59 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 MIR4756-201ENST00000577874 78 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-2.14□□□□□ -2.75
USP54Q70EL1 Y_RNA.5-201ENST00000362334 102 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU6-1290P-201ENST00000362957 109 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNY3P14-201ENST00000384309 102 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 MIR507-201ENST00000385234 94 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU6-651P-201ENST00000411040 105 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU6-75P-201ENST00000515944 104 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 MIR3139-201ENST00000579145 76 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 AC090971.5-201ENST00000621102 293 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNY1P11-201ENST00000363759 113 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU4-17P-201ENST00000365598 141 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 Y_RNA.461-201ENST00000384263 103 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 SNORD116-1-201ENST00000384335 95 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-2.15□□□□□ -2.75
USP54Q70EL1 RNU6-65P-201ENST00000516332 98 ntBASIC-2.15□□□□□ -2.75
USP54Q70EL1 SNORD115-19-201ENST00000363098 82 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 SNORD115-18-201ENST00000363293 82 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 SNORD115-17-201ENST00000364612 82 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 Y_RNA.262-201ENST00000364641 102 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 MIR759-201ENST00000390224 91 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 MIR1277-201ENST00000408536 78 ntBASIC-2.16□□□□□ -2.76
USP54Q70EL1 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-2.16□□□□□ -2.76
USP54Q70EL1 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-2.16□□□□□ -2.76
USP54Q70EL1 Y_RNA.10-201ENST00000362371 110 ntBASIC-2.17□□□□□ -2.76
USP54Q70EL1 Y_RNA.250-201ENST00000364542 110 ntBASIC-2.17□□□□□ -2.76
USP54Q70EL1 RNU6-80P-201ENST00000384195 107 ntBASIC-2.17□□□□□ -2.76
USP54Q70EL1 RNU7-152P-201ENST00000458982 64 ntBASIC-2.17□□□□□ -2.76
USP54Q70EL1 Y_RNA.82-201ENST00000363000 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.92-201ENST00000363043 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.235-201ENST00000364412 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.306-201ENST00000365015 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.312-201ENST00000365089 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.322-201ENST00000365151 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 MIR487B-201ENST00000385021 84 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 RNU6-1177P-201ENST00000391058 104 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.650-201ENST00000459002 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.777-201ENST00000516982 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.771-201ENST00000598668 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.789-201ENST00000622480 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 MIRLET7F1-201ENST00000362202 87 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.16-201ENST00000362421 102 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 SNORD115-22-201ENST00000364456 82 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 RNU6-309P-201ENST00000364573 106 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 RNU6-101P-201ENST00000410323 104 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 Y_RNA.698-201ENST00000516798 118 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 AC080013.6-201ENST00000606185 215 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 MIR664B-201ENST00000626756 61 ntBASIC-2.18□□□□□ -2.76
USP54Q70EL1 SNORD115-27-201ENST00000364430 82 ntBASIC-2.19□□□□□ -2.76
USP54Q70EL1 Y_RNA.491-201ENST00000384417 107 ntBASIC-2.19□□□□□ -2.76
USP54Q70EL1 ELOCP20-201ENST00000422460 345 ntBASIC-2.19□□□□□ -2.76
USP54Q70EL1 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-2.19□□□□□ -2.76
USP54Q70EL1 RNY3P15-201ENST00000516297 97 ntBASIC-2.19□□□□□ -2.76
USP54Q70EL1 RNY4P20-201ENST00000516678 93 ntBASIC-2.19□□□□□ -2.76
USP54Q70EL1 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.2□□□□□ -2.76
USP54Q70EL1 RNU6-643P-201ENST00000384018 107 ntBASIC-2.2□□□□□ -2.76
USP54Q70EL1 Y_RNA.793-201ENST00000411222 111 ntBASIC-2.2□□□□□ -2.76
USP54Q70EL1 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-2.2□□□□□ -2.76
USP54Q70EL1 AC092794.1-201ENST00000612734 582 ntBASIC-2.2□□□□□ -2.76
USP54Q70EL1 SNORA63.2-201ENST00000362603 126 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 Y_RNA.315-201ENST00000365117 102 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 Y_RNA.384-201ENST00000383909 102 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 Y_RNA.590-201ENST00000410140 107 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 AC113618.1-201ENST00000416747 285 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 Y_RNA.797-201ENST00000515977 94 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 MIR4282-201ENST00000583613 67 ntBASIC-2.21□□□□□ -2.76
USP54Q70EL1 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.22□□□□□ -2.76
USP54Q70EL1 Y_RNA.558-201ENST00000384685 113 ntBASIC-2.22□□□□□ -2.76
USP54Q70EL1 FGF7P7-201ENST00000514120 227 ntBASIC-2.22□□□□□ -2.76
USP54Q70EL1 RNU6-976P-201ENST00000516086 111 ntBASIC-2.22□□□□□ -2.76
USP54Q70EL1 SNORA40.15-201ENST00000516884 107 ntBASIC-2.22□□□□□ -2.76
USP54Q70EL1 Y_RNA.71-201ENST00000362892 104 ntBASIC-2.22□□□□□ -2.77
USP54Q70EL1 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.22□□□□□ -2.77
USP54Q70EL1 AC069439.1-201ENST00000494739 167 ntBASIC-2.22□□□□□ -2.77
USP54Q70EL1 RNU6-1234P-201ENST00000516877 103 ntBASIC-2.22□□□□□ -2.77
USP54Q70EL1 RNU6-1271P-201ENST00000517049 105 ntBASIC-2.22□□□□□ -2.77
USP54Q70EL1 SNORD116-2-201ENST00000384274 95 ntBASIC-2.23□□□□□ -2.77
USP54Q70EL1 RNU6-823P-201ENST00000391042 103 ntBASIC-2.23□□□□□ -2.77
USP54Q70EL1 AC018880.2-201ENST00000414265 201 ntBASIC-2.23□□□□□ -2.77
USP54Q70EL1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-2.23□□□□□ -2.77
USP54Q70EL1 AL442128.1-201ENST00000615151 90 ntBASIC-2.23□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 216 ms