Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SNORA26.4-201ENST00000391188 123 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 TRDV1-202ENST00000621643 102 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.15□□□□□ -2.59
SHOX2O60902 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 RNU6-194P-201ENST00000363862 105 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 RNU6-450P-201ENST00000364654 107 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 RNU6-746P-201ENST00000384112 109 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 RNU6-651P-201ENST00000411040 105 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 AC113618.1-201ENST00000416747 285 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 AL161932.1-201ENST00000437408 146 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 AL121914.1-201ENST00000450188 156 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 MIR6773-201ENST00000612812 74 ntBASIC-1.16□□□□□ -2.6
SHOX2O60902 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 SNORD77B-201ENST00000391112 67 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.17□□□□□ -2.6
SHOX2O60902 AC097510.1-201ENST00000510945 133 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 RNU7-123P-201ENST00000515911 60 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 SNORD63.1-201ENST00000516178 80 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 RNY3P15-201ENST00000516297 97 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 MIR664B-201ENST00000626756 61 ntBASIC-1.17□□□□□ -2.6
SHOX2O60902 RNU6-230P-201ENST00000362457 104 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 SNORD75.2-201ENST00000408784 58 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 MIR548O2-201ENST00000616090 70 ntBASIC-1.18□□□□□ -2.6
SHOX2O60902 RNA5SP405-201ENST00000363059 114 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 Y_RNA.419-201ENST00000384041 102 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 RNU6-616P-201ENST00000384353 107 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 MIR34C-201ENST00000384831 77 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 ELOCP20-201ENST00000422460 345 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 RNU7-164P-201ENST00000459221 62 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 RNU6-240P-201ENST00000516098 97 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 MIR4308-201ENST00000580634 81 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 AC021443.1-201ENST00000604478 211 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 AL365265.1-201ENST00000621045 234 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.19□□□□□ -2.6
SHOX2O60902 SNORD36A-201ENST00000362874 73 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 RNU6-806P-201ENST00000365147 105 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.579-201ENST00000390939 94 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 RNU6-400P-201ENST00000391173 106 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 RNU4-61P-201ENST00000411243 107 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.2□□□□□ -2.6
SHOX2O60902 MIR6888-201ENST00000621977 67 ntBASIC-1.2□□□□□ -2.6
SHOX2O60902 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 AC138907.4-201ENST00000570107 226 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 MIR4744-201ENST00000581563 82 ntBASIC-1.21□□□□□ -2.6
SHOX2O60902 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.21□□□□□ -2.6
SHOX2O60902 RNU6-79P-201ENST00000362511 107 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 SNORD27-201ENST00000363981 72 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 MIR216B-201ENST00000390186 82 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.22□□□□□ -2.6
SHOX2O60902 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.23□□□□□ -2.61
SHOX2O60902 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.23□□□□□ -2.61
SHOX2O60902 snoR1.1-201ENST00000628177 80 ntBASIC-1.23□□□□□ -2.61
SHOX2O60902 RNU6-957P-201ENST00000363652 99 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 SNORD115-22-201ENST00000364456 82 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 RNU6-243P-201ENST00000391140 107 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 MIR4282-201ENST00000583613 67 ntBASIC-1.24□□□□□ -2.61
SHOX2O60902 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.24□□□□□ -2.61
SHOX2O60902 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.25□□□□□ -2.61
SHOX2O60902 RNU6-578P-201ENST00000390980 103 ntBASIC-1.25□□□□□ -2.61
SHOX2O60902 MTND5P22-201ENST00000458380 195 ntBASIC-1.25□□□□□ -2.61
SHOX2O60902 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.25□□□□□ -2.61
SHOX2O60902 RNU6-168P-201ENST00000516189 101 ntBASIC-1.25□□□□□ -2.61
SHOX2O60902 SNORD114-4-201ENST00000363962 75 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 RNU6-54P-201ENST00000365563 107 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 RNU6-643P-201ENST00000384018 107 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 RNU6-762P-201ENST00000517107 102 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 MIR4696-201ENST00000581431 70 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.26□□□□□ -2.61
SHOX2O60902 U2.14-201ENST00000615943 113 ntBASIC-1.26□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 242.9 ms