Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORD116-24-201ENST00000384549 92 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-1177P-201ENST00000391058 104 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 U3.27-201ENST00000391237 200 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-1052P-201ENST00000411398 104 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-719P-201ENST00000516671 104 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR6078-201ENST00000611069 100 ntBASIC2.16□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AC110620.1-201ENST00000416042 228 ntBASIC2.15□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNU6-1265P-201ENST00000516342 103 ntBASIC2.15□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AL353770.2-201ENST00000620024 78 ntBASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR4773-1-201ENST00000637203 78 ntBASIC2.14□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNU6-614P-201ENST00000384369 107 ntBASIC2.13□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC2.13□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORA77B-201ENST00000578179 125 ntBASIC2.13□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 U6.59-201ENST00000615686 107 ntBASIC2.13□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORD114-27-201ENST00000363766 70 ntBASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AC055731.1-201ENST00000474387 401 ntBASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNA5SP121-201ENST00000516537 101 ntBASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR8074-201ENST00000615081 81 ntBASIC2.12□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR125B2-201ENST00000385128 89 ntBASIC2.11□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNA5SP233-201ENST00000459153 113 ntBASIC2.11□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 Evf-2_5p.1-201ENST00000614213 142 ntBASIC2.11□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORD115-44-201ENST00000365391 82 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR17-201ENST00000385012 84 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORA40.6-201ENST00000391153 128 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORD83.1-201ENST00000411362 77 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AC244098.3-201ENST00000424803 96 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR4255-201ENST00000579351 72 ntBASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNA5SP276-201ENST00000362580 94 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNU6-934P-201ENST00000365154 107 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 RNU6-382P-201ENST00000365181 106 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 snoU13.21-201ENST00000459368 105 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 MIR3664-201ENST00000579074 99 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 AL109933.3-201ENST00000619095 188 ntBASIC2.09□□□□□ -2.07
SENP3-EIF4A1A0A087X0R7 SNORD113.3-201ENST00000364630 78 ntBASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-535P-201ENST00000384722 107 ntBASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AL356379.1-201ENST00000414105 126 ntBASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AC079150.2-201ENST00000443733 78 ntBASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AL590095.2-201ENST00000604136 117 ntBASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MTND4LP1-201ENST00000446263 157 ntBASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AL691482.2-201ENST00000457453 84 ntBASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR4771-2-201ENST00000577758 74 ntBASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR4771-1-201ENST00000582617 74 ntBASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR1304-201ENST00000408243 91 ntBASIC2.06□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-287P-201ENST00000516230 98 ntBASIC2.06□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AL773524.1-201ENST00000614065 229 ntBASIC2.06□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR8063-201ENST00000621930 81 ntBASIC2.06□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 SNORA16B-201ENST00000364674 135 ntBASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR633-201ENST00000384821 98 ntBASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR216B-201ENST00000390186 82 ntBASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AC244505.6-201ENST00000452829 130 ntBASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 MIR4713-201ENST00000582691 75 ntBASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 SNORD33-201ENST00000362761 85 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 Y_RNA.258-201ENST00000364613 105 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-1187P-201ENST00000364771 110 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 SNORD75.2-201ENST00000408784 58 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AC008608.1-201ENST00000603910 127 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 AC012493.3-201ENST00000604494 112 ntBASIC2.04□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 Y_RNA.330-201ENST00000365230 109 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-364P-201ENST00000384387 107 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-1065P-201ENST00000384513 106 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 SNORA67.6-201ENST00000391093 99 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNA5SP330-201ENST00000517096 96 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC2.03□□□□□ -2.08
SENP3-EIF4A1A0A087X0R7 RNU6-668P-201ENST00000364180 107 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR320A-201ENST00000385302 82 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU7-24P-201ENST00000458867 62 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 snoU13.9-201ENST00000458927 103 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AC079140.2-201ENST00000506193 142 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU7-13P-201ENST00000516413 62 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AC019176.1-201ENST00000518519 225 ntBASIC2.02□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNA5SP245-201ENST00000364239 121 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 SNORD111-201ENST00000408139 94 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RPS26P5-201ENST00000418544 335 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-542P-201ENST00000516405 103 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-977P-201ENST00000516411 103 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR3122-201ENST00000577243 73 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AL096840.1-201ENST00000603287 93 ntBASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-982P-201ENST00000516216 102 ntBASIC2□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR4676-201ENST00000583078 72 ntBASIC2□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR302D-201ENST00000362275 68 ntBASIC1.99□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR938-201ENST00000401216 83 ntBASIC1.99□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms