Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 7SK.13-201ENST00000622040 250 ntBASIC2.19□□□□□ -2.06
HLA-CQ95604 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
HLA-CQ95604 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-CQ95604 Y_RNA.205-201ENST00000364128 113 ntBASIC2.18□□□□□ -2.06
HLA-CQ95604 SNORA80D-201ENST00000384488 135 ntBASIC2.18□□□□□ -2.06
HLA-CQ95604 SNORA31.2-201ENST00000516019 134 ntBASIC2.18□□□□□ -2.06
HLA-CQ95604 AC027335.2-201ENST00000624030 375 ntBASIC2.18□□□□□ -2.06
HLA-CQ95604 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HLA-CQ95604 RNU6-330P-201ENST00000363015 107 ntBASIC2.17□□□□□ -2.06
HLA-CQ95604 RNA5SP190-201ENST00000365222 118 ntBASIC2.17□□□□□ -2.06
HLA-CQ95604 AL356379.1-201ENST00000414105 126 ntBASIC2.17□□□□□ -2.06
HLA-CQ95604 RNU7-40P-201ENST00000516397 64 ntBASIC2.17□□□□□ -2.06
HLA-CQ95604 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HLA-CQ95604 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
HLA-CQ95604 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
HLA-CQ95604 SNORD115-31-201ENST00000365318 82 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 MIR7-2-201ENST00000384970 110 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 AP1B1P2-201ENST00000416196 106 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 RNU7-21P-201ENST00000459430 62 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 AC008834.1-201ENST00000511612 175 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 Y_RNA.783-201ENST00000613546 102 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 Evf-2_5p.1-201ENST00000614213 142 ntBASIC2.16□□□□□ -2.06
HLA-CQ95604 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-CQ95604 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
HLA-CQ95604 RNU6-1177P-201ENST00000391058 104 ntBASIC2.15□□□□□ -2.07
HLA-CQ95604 RNU7-90P-201ENST00000459216 62 ntBASIC2.15□□□□□ -2.07
HLA-CQ95604 AL137847.3-201ENST00000611521 109 ntBASIC2.15□□□□□ -2.07
HLA-CQ95604 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HLA-CQ95604 RNU6-824P-201ENST00000363724 104 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 Y_RNA.174-201ENST00000363781 105 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 Y_RNA.224-201ENST00000364308 111 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 SNORD13-201ENST00000459299 104 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 SNORA25.15-201ENST00000516487 89 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 AL096840.1-201ENST00000603287 93 ntBASIC2.14□□□□□ -2.07
HLA-CQ95604 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
HLA-CQ95604 ZNF209P-201ENST00000593450 2304 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 RNU6-895P-201ENST00000384125 103 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.13□□□□□ -2.07
HLA-CQ95604 AC093423.1-201ENST00000440817 142 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 RNU7-102P-201ENST00000458948 62 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 MIR5694-201ENST00000581190 76 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 MIR4804-201ENST00000581683 73 ntBASIC2.13□□□□□ -2.07
HLA-CQ95604 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.13□□□□□ -2.07
HLA-CQ95604 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-CQ95604 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-CQ95604 RNU1-119P-201ENST00000391122 165 ntBASIC2.12□□□□□ -2.07
HLA-CQ95604 RNU4-62P-201ENST00000410125 130 ntBASIC2.12□□□□□ -2.07
HLA-CQ95604 RNU6-274P-201ENST00000459566 107 ntBASIC2.12□□□□□ -2.07
HLA-CQ95604 RNU6-902P-201ENST00000517212 91 ntBASIC2.12□□□□□ -2.07
HLA-CQ95604 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.12□□□□□ -2.07
HLA-CQ95604 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HLA-CQ95604 RNA5SP245-201ENST00000364239 121 ntBASIC2.11□□□□□ -2.07
HLA-CQ95604 Y_RNA.363-201ENST00000365529 113 ntBASIC2.11□□□□□ -2.07
HLA-CQ95604 RNU6-994P-201ENST00000410507 111 ntBASIC2.11□□□□□ -2.07
HLA-CQ95604 AC025033.1-201ENST00000463883 194 ntBASIC2.11□□□□□ -2.07
HLA-CQ95604 RNU6-287P-201ENST00000516230 98 ntBASIC2.11□□□□□ -2.07
HLA-CQ95604 SNORA25.4-201ENST00000363666 124 ntBASIC2.1□□□□□ -2.07
HLA-CQ95604 RNU6-977P-201ENST00000516411 103 ntBASIC2.1□□□□□ -2.07
HLA-CQ95604 RNU7-13P-201ENST00000516413 62 ntBASIC2.1□□□□□ -2.07
HLA-CQ95604 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.1□□□□□ -2.07
HLA-CQ95604 RNU6-369P-201ENST00000362515 102 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 SNORD12-201ENST00000391002 90 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 MIR934-201ENST00000401241 83 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 RNU7-56P-201ENST00000458744 62 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 SNORD79.1-201ENST00000516069 84 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 AC023827.1-201ENST00000569247 97 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 AC005520.4-201ENST00000604337 90 ntBASIC2.09□□□□□ -2.07
HLA-CQ95604 HMGN2P19-201ENST00000425149 265 ntBASIC2.08□□□□□ -2.08
HLA-CQ95604 RNU7-24P-201ENST00000458867 62 ntBASIC2.08□□□□□ -2.08
HLA-CQ95604 BX248123.2-201ENST00000606318 124 ntBASIC2.08□□□□□ -2.08
HLA-CQ95604 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HLA-CQ95604 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HLA-CQ95604 SNORD45.1-201ENST00000363181 77 ntBASIC2.07□□□□□ -2.08
HLA-CQ95604 RNA5SP403-201ENST00000363598 108 ntBASIC2.07□□□□□ -2.08
HLA-CQ95604 RNU6-881P-201ENST00000516813 102 ntBASIC2.07□□□□□ -2.08
HLA-CQ95604 MIR6840-201ENST00000611937 71 ntBASIC2.07□□□□□ -2.08
HLA-CQ95604 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
HLA-CQ95604 MIR1-1-201ENST00000362147 71 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 SNORA67.5-201ENST00000391036 107 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 RNU6-1052P-201ENST00000411398 104 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 RNU6-719P-201ENST00000516671 104 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 RNU6-135P-201ENST00000516769 101 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 uc_338.16-201ENST00000621804 95 ntBASIC2.06□□□□□ -2.08
HLA-CQ95604 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
HLA-CQ95604 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.06□□□□□ -2.08
HLA-CQ95604 SNORD115-22-201ENST00000364456 82 ntBASIC2.05□□□□□ -2.08
HLA-CQ95604 RNU6-910P-201ENST00000390844 107 ntBASIC2.05□□□□□ -2.08
HLA-CQ95604 AC067940.1-201ENST00000458411 300 ntBASIC2.05□□□□□ -2.08
HLA-CQ95604 MIR2113-201ENST00000459007 91 ntBASIC2.05□□□□□ -2.08
HLA-CQ95604 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
HLA-CQ95604 RNU6-1126P-201ENST00000384002 107 ntBASIC2.04□□□□□ -2.08
HLA-CQ95604 Y_RNA.443-201ENST00000384135 111 ntBASIC2.04□□□□□ -2.08
HLA-CQ95604 MIR100-201ENST00000385259 80 ntBASIC2.04□□□□□ -2.08
HLA-CQ95604 RNU6-630P-201ENST00000391258 106 ntBASIC2.04□□□□□ -2.08
HLA-CQ95604 SNORD75.2-201ENST00000408784 58 ntBASIC2.04□□□□□ -2.08
HLA-CQ95604 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.03□□□□□ -2.08
HLA-CQ95604 RNU6-1216P-201ENST00000362590 107 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms