Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF355P-201ENST00000427301 3216 ntBASIC2.25□□□□□ -2.05
SH3RF1Q7Z6J0 RNU6-934P-201ENST00000365154 107 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 Y_RNA.330-201ENST00000365230 109 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 MIR451A-201ENST00000385059 72 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 SNORD83.1-201ENST00000411362 77 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 RNU6-1052P-201ENST00000411398 104 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 RNA5SP182-201ENST00000516064 82 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 RNU6-1265P-201ENST00000516342 103 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 RNU6-719P-201ENST00000516671 104 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 MIR8070-201ENST00000616510 88 ntBASIC2.24□□□□□ -2.05
SH3RF1Q7Z6J0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 SNORD113.3-201ENST00000364630 78 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 SNORD1A-201ENST00000364968 72 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 MIR144-201ENST00000384886 86 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 RNU6-1177P-201ENST00000391058 104 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 AL356379.1-201ENST00000414105 126 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 SNORD13-201ENST00000459299 104 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 AC138907.6-201ENST00000568401 126 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 AC138869.1-201ENST00000568623 124 ntBASIC2.23□□□□□ -2.05
SH3RF1Q7Z6J0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 MIR30A-201ENST00000385092 71 ntBASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 AC003989.2-201ENST00000440224 169 ntBASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 snoU13.21-201ENST00000459368 105 ntBASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
SH3RF1Q7Z6J0 Y_RNA.258-201ENST00000364613 105 ntBASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 MIR599-201ENST00000385069 95 ntBASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 MIR4771-2-201ENST00000577758 74 ntBASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 MIR4771-1-201ENST00000582617 74 ntBASIC2.21□□□□□ -2.06
SH3RF1Q7Z6J0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-382P-201ENST00000365181 106 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 RNA5SP190-201ENST00000365222 118 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 MIR125B2-201ENST00000385128 89 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 U3.27-201ENST00000391237 200 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-274P-201ENST00000459566 107 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 MIR4773-1-201ENST00000637203 78 ntBASIC2.2□□□□□ -2.06
SH3RF1Q7Z6J0 MIR302D-201ENST00000362275 68 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 MIR499A-201ENST00000384903 122 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 MIR489-201ENST00000384923 84 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 SUMO2P12-201ENST00000405924 140 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 RNU4-62P-201ENST00000410125 130 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 AC244098.3-201ENST00000424803 96 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-982P-201ENST00000516216 102 ntBASIC2.19□□□□□ -2.06
SH3RF1Q7Z6J0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SH3RF1Q7Z6J0 AL691482.2-201ENST00000457453 84 ntBASIC2.18□□□□□ -2.06
SH3RF1Q7Z6J0 AC103810.8-201ENST00000607347 118 ntBASIC2.18□□□□□ -2.06
SH3RF1Q7Z6J0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.18□□□□□ -2.06
SH3RF1Q7Z6J0 AP1B1P2-201ENST00000416196 106 ntBASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-1057P-201ENST00000517162 102 ntBASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 AL096840.1-201ENST00000603287 93 ntBASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 AL359821.1-201ENST00000605519 182 ntBASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 AC092634.7-201ENST00000621022 103 ntBASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.17□□□□□ -2.06
SH3RF1Q7Z6J0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-1079P-201ENST00000362861 110 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 Y_RNA.375-201ENST00000365625 101 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-364P-201ENST00000384387 107 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 SNORD111-201ENST00000408139 94 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 HMGN2P19-201ENST00000425149 265 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 TRMT112P2-201ENST00000512910 132 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-542P-201ENST00000516405 103 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-165P-201ENST00000517170 99 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 MIR3920-201ENST00000581751 86 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 MIR8081-201ENST00000611533 95 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.16□□□□□ -2.06
SH3RF1Q7Z6J0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
SH3RF1Q7Z6J0 RNU6-535P-201ENST00000384722 107 ntBASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 RNA5SP489-201ENST00000410986 109 ntBASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 AC036111.3-201ENST00000526389 112 ntBASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 AL512310.8-201ENST00000550183 120 ntBASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SH3RF1Q7Z6J0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
SH3RF1Q7Z6J0 SNORA25.15-201ENST00000516487 89 ntBASIC2.14□□□□□ -2.07
SH3RF1Q7Z6J0 RNU6-668P-201ENST00000364180 107 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 MIR676-201ENST00000390702 67 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 HMGN2P38-201ENST00000423806 265 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 MTND4LP1-201ENST00000446263 157 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 AC048334.1-201ENST00000477975 159 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 RN7SKP88-201ENST00000516847 250 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 7SK.8-201ENST00000612110 250 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 7SK.11-201ENST00000615477 250 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 7SK.13-201ENST00000622040 250 ntBASIC2.13□□□□□ -2.07
SH3RF1Q7Z6J0 RNU6-446P-201ENST00000362827 106 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 SNORA25.5-201ENST00000363782 126 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 MIR9-3-201ENST00000385084 90 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 SNORD75.2-201ENST00000408784 58 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 RPS26P5-201ENST00000418544 335 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 RNU7-24P-201ENST00000458867 62 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 RNU6-287P-201ENST00000516230 98 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 MIR466-201ENST00000580653 84 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 MIR4303-201ENST00000581299 66 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 MIR4448-201ENST00000584360 86 ntBASIC2.12□□□□□ -2.07
SH3RF1Q7Z6J0 AL078603.1-201ENST00000603824 313 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 205.6 ms