Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 7SK.8-201ENST00000612110 250 ntBASIC1.92□□□□□ -2.1
MSX1P28360 7SK.11-201ENST00000615477 250 ntBASIC1.92□□□□□ -2.1
MSX1P28360 7SK.13-201ENST00000622040 250 ntBASIC1.92□□□□□ -2.1
MSX1P28360 AC027335.2-201ENST00000624030 375 ntBASIC1.92□□□□□ -2.1
MSX1P28360 RNA5SP37-201ENST00000365420 130 ntBASIC1.91□□□□□ -2.1
MSX1P28360 RNU6-895P-201ENST00000384125 103 ntBASIC1.91□□□□□ -2.1
MSX1P28360 U3.27-201ENST00000391237 200 ntBASIC1.91□□□□□ -2.1
MSX1P28360 RNU6-295P-201ENST00000516901 104 ntBASIC1.91□□□□□ -2.1
MSX1P28360 uc_338.20-201ENST00000621563 178 ntBASIC1.91□□□□□ -2.1
MSX1P28360 ZNF355P-201ENST00000427301 3216 ntBASIC1.9□□□□□ -2.11
MSX1P28360 Y_RNA.363-201ENST00000365529 113 ntBASIC1.9□□□□□ -2.11
MSX1P28360 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
MSX1P28360 AL591704.2-201ENST00000421658 181 ntBASIC1.9□□□□□ -2.11
MSX1P28360 RNU7-102P-201ENST00000458948 62 ntBASIC1.9□□□□□ -2.11
MSX1P28360 RNU6-287P-201ENST00000516230 98 ntBASIC1.9□□□□□ -2.11
MSX1P28360 MIR3198-2-201ENST00000577868 80 ntBASIC1.9□□□□□ -2.11
MSX1P28360 MIR5002-201ENST00000584713 97 ntBASIC1.9□□□□□ -2.11
MSX1P28360 AL096840.1-201ENST00000603287 93 ntBASIC1.9□□□□□ -2.11
MSX1P28360 MIR8053-201ENST00000613344 75 ntBASIC1.9□□□□□ -2.11
MSX1P28360 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.9□□□□□ -2.11
MSX1P28360 MIR7111-201ENST00000619751 72 ntBASIC1.9□□□□□ -2.11
MSX1P28360 SNORD115-44-201ENST00000365391 82 ntBASIC1.89□□□□□ -2.11
MSX1P28360 RNU6-1177P-201ENST00000391058 104 ntBASIC1.89□□□□□ -2.11
MSX1P28360 RNU1-78P-201ENST00000391248 165 ntBASIC1.89□□□□□ -2.11
MSX1P28360 SNORA26.9-201ENST00000391322 122 ntBASIC1.89□□□□□ -2.11
MSX1P28360 AC025033.1-201ENST00000463883 194 ntBASIC1.89□□□□□ -2.11
MSX1P28360 RNU1-40P-201ENST00000516816 164 ntBASIC1.89□□□□□ -2.11
MSX1P28360 RNU1-97P-201ENST00000516872 164 ntBASIC1.89□□□□□ -2.11
MSX1P28360 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.89□□□□□ -2.11
MSX1P28360 AC005520.4-201ENST00000604337 90 ntBASIC1.89□□□□□ -2.11
MSX1P28360 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.89□□□□□ -2.11
MSX1P28360 SNORD45.1-201ENST00000363181 77 ntBASIC1.88□□□□□ -2.11
MSX1P28360 SNORD45A-201ENST00000384512 84 ntBASIC1.88□□□□□ -2.11
MSX1P28360 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
MSX1P28360 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.88□□□□□ -2.11
MSX1P28360 RNU7-21P-201ENST00000459430 62 ntBASIC1.88□□□□□ -2.11
MSX1P28360 MIR4804-201ENST00000581683 73 ntBASIC1.88□□□□□ -2.11
MSX1P28360 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
MSX1P28360 SNORA80D-201ENST00000384488 135 ntBASIC1.87□□□□□ -2.11
MSX1P28360 RNU6-630P-201ENST00000391258 106 ntBASIC1.87□□□□□ -2.11
MSX1P28360 MIR934-201ENST00000401241 83 ntBASIC1.87□□□□□ -2.11
MSX1P28360 AC093423.1-201ENST00000440817 142 ntBASIC1.87□□□□□ -2.11
MSX1P28360 MIR337-201ENST00000362281 93 ntBASIC1.86□□□□□ -2.11
MSX1P28360 RNU6-369P-201ENST00000362515 102 ntBASIC1.86□□□□□ -2.11
MSX1P28360 SNORD115-22-201ENST00000364456 82 ntBASIC1.86□□□□□ -2.11
MSX1P28360 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.86□□□□□ -2.11
MSX1P28360 RNU6-752P-201ENST00000516376 102 ntBASIC1.86□□□□□ -2.11
MSX1P28360 RNU6-881P-201ENST00000516813 102 ntBASIC1.86□□□□□ -2.11
MSX1P28360 MIR4773-1-201ENST00000637203 78 ntBASIC1.86□□□□□ -2.11
MSX1P28360 RNU6-994P-201ENST00000410507 111 ntBASIC1.85□□□□□ -2.11
MSX1P28360 RNU7-56P-201ENST00000458744 62 ntBASIC1.85□□□□□ -2.11
MSX1P28360 RNU6-274P-201ENST00000459566 107 ntBASIC1.85□□□□□ -2.11
MSX1P28360 RNU6-977P-201ENST00000516411 103 ntBASIC1.85□□□□□ -2.11
MSX1P28360 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.85□□□□□ -2.11
MSX1P28360 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.85□□□□□ -2.11
MSX1P28360 AC012493.3-201ENST00000604494 112 ntBASIC1.85□□□□□ -2.11
MSX1P28360 RNU1-119P-201ENST00000391122 165 ntBASIC1.84□□□□□ -2.11
MSX1P28360 HMGN2P19-201ENST00000425149 265 ntBASIC1.84□□□□□ -2.11
MSX1P28360 RNU7-13P-201ENST00000516413 62 ntBASIC1.84□□□□□ -2.11
MSX1P28360 MIR4422-201ENST00000581938 83 ntBASIC1.84□□□□□ -2.11
MSX1P28360 AL359821.1-201ENST00000605519 182 ntBASIC1.84□□□□□ -2.11
MSX1P28360 MIR6845-201ENST00000613182 61 ntBASIC1.84□□□□□ -2.11
MSX1P28360 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSX1P28360 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.83□□□□□ -2.12
MSX1P28360 RNU1-17P-201ENST00000363022 152 ntBASIC1.83□□□□□ -2.12
MSX1P28360 SNORA25.4-201ENST00000363666 124 ntBASIC1.83□□□□□ -2.12
MSX1P28360 Y_RNA.226-201ENST00000364337 114 ntBASIC1.83□□□□□ -2.12
MSX1P28360 RNU6-382P-201ENST00000365181 106 ntBASIC1.83□□□□□ -2.12
MSX1P28360 Y_RNA.443-201ENST00000384135 111 ntBASIC1.83□□□□□ -2.12
MSX1P28360 MIR583-201ENST00000384846 75 ntBASIC1.83□□□□□ -2.12
MSX1P28360 RNU6-910P-201ENST00000390844 107 ntBASIC1.83□□□□□ -2.12
MSX1P28360 RNU7-90P-201ENST00000459216 62 ntBASIC1.83□□□□□ -2.12
MSX1P28360 RNU6-1053P-201ENST00000515930 101 ntBASIC1.83□□□□□ -2.12
MSX1P28360 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSX1P28360 Y_RNA.258-201ENST00000364613 105 ntBASIC1.82□□□□□ -2.12
MSX1P28360 MIR100-201ENST00000385259 80 ntBASIC1.82□□□□□ -2.12
MSX1P28360 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
MSX1P28360 RNA5SP364-201ENST00000516938 78 ntBASIC1.82□□□□□ -2.12
MSX1P28360 uc_338.16-201ENST00000621804 95 ntBASIC1.82□□□□□ -2.12
MSX1P28360 RNU6-1216P-201ENST00000362590 107 ntBASIC1.81□□□□□ -2.12
MSX1P28360 SNORD113.1-201ENST00000363280 73 ntBASIC1.81□□□□□ -2.12
MSX1P28360 Y_RNA.118-201ENST00000363300 101 ntBASIC1.81□□□□□ -2.12
MSX1P28360 RNU6-604P-201ENST00000390917 100 ntBASIC1.81□□□□□ -2.12
MSX1P28360 AC008834.1-201ENST00000511612 175 ntBASIC1.81□□□□□ -2.12
MSX1P28360 SNORA31.14-201ENST00000516728 116 ntBASIC1.81□□□□□ -2.12
MSX1P28360 RNU6-902P-201ENST00000517212 91 ntBASIC1.81□□□□□ -2.12
MSX1P28360 AL078603.1-201ENST00000603824 313 ntBASIC1.81□□□□□ -2.12
MSX1P28360 Y_RNA.783-201ENST00000613546 102 ntBASIC1.81□□□□□ -2.12
MSX1P28360 MIR1-1-201ENST00000362147 71 ntBASIC1.8□□□□□ -2.12
MSX1P28360 Y_RNA.32-201ENST00000362589 110 ntBASIC1.8□□□□□ -2.12
MSX1P28360 RNA5SP403-201ENST00000363598 108 ntBASIC1.8□□□□□ -2.12
MSX1P28360 Y_RNA.174-201ENST00000363781 105 ntBASIC1.8□□□□□ -2.12
MSX1P28360 MIR1287-201ENST00000408492 90 ntBASIC1.8□□□□□ -2.12
MSX1P28360 AC244098.3-201ENST00000424803 96 ntBASIC1.8□□□□□ -2.12
MSX1P28360 RNA5SP182-201ENST00000516064 82 ntBASIC1.8□□□□□ -2.12
MSX1P28360 SNORD79.1-201ENST00000516069 84 ntBASIC1.8□□□□□ -2.12
MSX1P28360 MIR4781-201ENST00000585250 76 ntBASIC1.8□□□□□ -2.12
MSX1P28360 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.79□□□□□ -2.12
MSX1P28360 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
MSX1P28360 SNORD115-24-201ENST00000363528 82 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms