Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL359851.1-201ENST00000569460 4997 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL8A1P27658 MIR378A-201ENST00000362177 66 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 RNU6-302P-201ENST00000365249 107 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 RNU4-88P-201ENST00000411220 86 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 RNU7-13P-201ENST00000516413 62 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 MIR4529-201ENST00000578110 78 ntBASIC1.97□□□□□ -2.09
COL8A1P27658 RNU1-52P-201ENST00000384190 164 ntBASIC1.96□□□□□ -2.1
COL8A1P27658 SNORD83.1-201ENST00000411362 77 ntBASIC1.96□□□□□ -2.1
COL8A1P27658 RNA5SP402-201ENST00000517148 110 ntBASIC1.96□□□□□ -2.1
COL8A1P27658 AC008608.1-201ENST00000603910 127 ntBASIC1.96□□□□□ -2.1
COL8A1P27658 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.96□□□□□ -2.1
COL8A1P27658 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
COL8A1P27658 RNU6-934P-201ENST00000365154 107 ntBASIC1.95□□□□□ -2.1
COL8A1P27658 SNORA31.25-201ENST00000517242 134 ntBASIC1.95□□□□□ -2.1
COL8A1P27658 AC245884.12-201ENST00000615364 59 ntBASIC1.95□□□□□ -2.1
COL8A1P27658 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL8A1P27658 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.94□□□□□ -2.1
COL8A1P27658 SNORD60.1-201ENST00000362451 73 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 Y_RNA.379-201ENST00000365653 102 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 RNU6-1126P-201ENST00000384002 107 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 RNU6-260P-201ENST00000384092 107 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 TRMT112P2-201ENST00000512910 132 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 MIR5694-201ENST00000581190 76 ntBASIC1.94□□□□□ -2.1
COL8A1P27658 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
COL8A1P27658 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL8A1P27658 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
COL8A1P27658 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
COL8A1P27658 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL8A1P27658 MIR583-201ENST00000384846 75 ntBASIC1.93□□□□□ -2.1
COL8A1P27658 snoU13.18-201ENST00000459483 104 ntBASIC1.93□□□□□ -2.1
COL8A1P27658 RNU6-1089P-201ENST00000516473 104 ntBASIC1.93□□□□□ -2.1
COL8A1P27658 MIR548AG2-201ENST00000581228 64 ntBASIC1.93□□□□□ -2.1
COL8A1P27658 MIR548O2-201ENST00000616090 70 ntBASIC1.93□□□□□ -2.1
COL8A1P27658 SNORA2.1-201ENST00000363089 137 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 SNORD113.3-201ENST00000364630 78 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 RNU6-656P-201ENST00000516785 107 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 MIR4771-2-201ENST00000577758 74 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 MIR4771-1-201ENST00000582617 74 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 MIR5007-201ENST00000583098 95 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 AL137847.3-201ENST00000611521 109 ntBASIC1.92□□□□□ -2.1
COL8A1P27658 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL8A1P27658 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL8A1P27658 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL8A1P27658 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL8A1P27658 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.91□□□□□ -2.1
COL8A1P27658 RNU6-439P-201ENST00000384188 106 ntBASIC1.91□□□□□ -2.1
COL8A1P27658 MIR617-201ENST00000385030 97 ntBASIC1.91□□□□□ -2.1
COL8A1P27658 SNORA75.1-201ENST00000391130 148 ntBASIC1.91□□□□□ -2.1
COL8A1P27658 SNORA77B-201ENST00000578179 125 ntBASIC1.91□□□□□ -2.1
COL8A1P27658 MIRLET7G-201ENST00000362280 84 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 RNU6-1312P-201ENST00000362425 108 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 Y_RNA.224-201ENST00000364308 111 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 SNORA6-201ENST00000384033 151 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 MIR3664-201ENST00000579074 99 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 MIR6840-201ENST00000611937 71 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 MIR6739-201ENST00000622461 75 ntBASIC1.9□□□□□ -2.11
COL8A1P27658 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
COL8A1P27658 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL8A1P27658 RNA5SP403-201ENST00000363598 108 ntBASIC1.89□□□□□ -2.11
COL8A1P27658 RNU6-364P-201ENST00000384387 107 ntBASIC1.89□□□□□ -2.11
COL8A1P27658 RNA5SP212-201ENST00000391223 107 ntBASIC1.89□□□□□ -2.11
COL8A1P27658 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
COL8A1P27658 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
COL8A1P27658 RNU6-54P-201ENST00000365563 107 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 RNU6-520P-201ENST00000384717 104 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 RPS26P5-201ENST00000418544 335 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 AC067940.1-201ENST00000458411 300 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 AC055731.1-201ENST00000474387 401 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 AL359821.1-201ENST00000605519 182 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 uc_338.10-201ENST00000621872 182 ntBASIC1.88□□□□□ -2.11
COL8A1P27658 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL8A1P27658 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
COL8A1P27658 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
COL8A1P27658 RNU7-193P-201ENST00000516723 65 ntBASIC1.87□□□□□ -2.11
COL8A1P27658 AC036111.3-201ENST00000526389 112 ntBASIC1.87□□□□□ -2.11
COL8A1P27658 MIR4676-201ENST00000583078 72 ntBASIC1.87□□□□□ -2.11
COL8A1P27658 MIR548V-201ENST00000584165 80 ntBASIC1.87□□□□□ -2.11
COL8A1P27658 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
COL8A1P27658 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL8A1P27658 MIR21-201ENST00000362134 72 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 RNU6-753P-201ENST00000363926 107 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 SNORA3A-201ENST00000364113 130 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 MIR938-201ENST00000401216 83 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 SNORD13-201ENST00000459299 104 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 Y_RNA.783-201ENST00000613546 102 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 AC027335.2-201ENST00000624030 375 ntBASIC1.86□□□□□ -2.11
COL8A1P27658 MIR519E-201ENST00000385075 84 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 RNU4-62P-201ENST00000410125 130 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 SNORD42B-201ENST00000458893 67 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 RNU7-102P-201ENST00000458948 62 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 RNU6-902P-201ENST00000517212 91 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 SNORA40.17-201ENST00000517256 115 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 MIR6766-201ENST00000622641 72 ntBASIC1.85□□□□□ -2.11
COL8A1P27658 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
COL8A1P27658 SNORD115-24-201ENST00000363528 82 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 Y_RNA.330-201ENST00000365230 109 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
COL8A1P27658 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 SNORD111-201ENST00000408139 94 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 222.6 ms