Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MIR591-201ENST00000385290 95 ntBASIC4.05□□□□□ -1.76
MSH5O43196 RNU6-1223P-201ENST00000517124 104 ntBASIC4.05□□□□□ -1.76
MSH5O43196 MIR4319-201ENST00000577285 85 ntBASIC4.05□□□□□ -1.76
MSH5O43196 uc_338.1-201ENST00000612113 180 ntBASIC4.05□□□□□ -1.76
MSH5O43196 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH5O43196 SNORA7.4-201ENST00000384249 137 ntBASIC4.04□□□□□ -1.76
MSH5O43196 RNU6-1267P-201ENST00000410747 107 ntBASIC4.04□□□□□ -1.76
MSH5O43196 RPS29P6-201ENST00000438196 145 ntBASIC4.04□□□□□ -1.76
MSH5O43196 RNU7-56P-201ENST00000458744 62 ntBASIC4.04□□□□□ -1.76
MSH5O43196 RNA5SP484-201ENST00000458857 111 ntBASIC4.04□□□□□ -1.76
MSH5O43196 MIR2682-201ENST00000580305 110 ntBASIC4.04□□□□□ -1.76
MSH5O43196 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
MSH5O43196 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
MSH5O43196 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH5O43196 U8.9-201ENST00000365667 134 ntBASIC4.03□□□□□ -1.76
MSH5O43196 Y_RNA.407-201ENST00000383986 113 ntBASIC4.03□□□□□ -1.76
MSH5O43196 MIR3664-201ENST00000579074 99 ntBASIC4.03□□□□□ -1.76
MSH5O43196 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH5O43196 SNORD115-25-201ENST00000362619 82 ntBASIC4.02□□□□□ -1.77
MSH5O43196 SNORA7.1-201ENST00000363750 139 ntBASIC4.02□□□□□ -1.77
MSH5O43196 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC4.02□□□□□ -1.77
MSH5O43196 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSH5O43196 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
MSH5O43196 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSH5O43196 SNORD15B-201ENST00000384714 146 ntBASIC4.01□□□□□ -1.77
MSH5O43196 AC244669.1-204ENST00000621564 178 ntBASIC4.01□□□□□ -1.77
MSH5O43196 SNORA54-201ENST00000384281 123 ntBASIC4□□□□□ -1.77
MSH5O43196 RNA5SP184-201ENST00000411071 108 ntBASIC4□□□□□ -1.77
MSH5O43196 JTBP1-201ENST00000441314 247 ntBASIC4□□□□□ -1.77
MSH5O43196 MIR6507-201ENST00000613630 70 ntBASIC4□□□□□ -1.77
MSH5O43196 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4□□□□□ -1.77
MSH5O43196 RNU6-1047P-201ENST00000364418 107 ntBASIC3.99□□□□□ -1.77
MSH5O43196 AC108938.1-201ENST00000451204 136 ntBASIC3.99□□□□□ -1.77
MSH5O43196 MIR548AE1-201ENST00000583292 70 ntBASIC3.99□□□□□ -1.77
MSH5O43196 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH5O43196 MIR644A-201ENST00000385262 94 ntBASIC3.98□□□□□ -1.77
MSH5O43196 RNA5SP229-201ENST00000410809 99 ntBASIC3.98□□□□□ -1.77
MSH5O43196 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.98□□□□□ -1.77
MSH5O43196 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH5O43196 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH5O43196 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
MSH5O43196 MIR22-201ENST00000362190 85 ntBASIC3.97□□□□□ -1.77
MSH5O43196 SNORD67-201ENST00000390833 111 ntBASIC3.97□□□□□ -1.77
MSH5O43196 RNU6-1262P-201ENST00000516217 96 ntBASIC3.97□□□□□ -1.77
MSH5O43196 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
MSH5O43196 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH5O43196 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH5O43196 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH5O43196 SNORD111-201ENST00000408139 94 ntBASIC3.95□□□□□ -1.78
MSH5O43196 AC023827.1-201ENST00000569247 97 ntBASIC3.95□□□□□ -1.78
MSH5O43196 MIR622-201ENST00000638396 96 ntBASIC3.95□□□□□ -1.78
MSH5O43196 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSH5O43196 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSH5O43196 RNU6-726P-201ENST00000364680 107 ntBASIC3.94□□□□□ -1.78
MSH5O43196 RNU6-716P-201ENST00000365621 103 ntBASIC3.94□□□□□ -1.78
MSH5O43196 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSH5O43196 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH5O43196 MIR548T-201ENST00000408369 74 ntBASIC3.93□□□□□ -1.78
MSH5O43196 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH5O43196 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
MSH5O43196 SNORA8.2-201ENST00000384372 139 ntBASIC3.92□□□□□ -1.78
MSH5O43196 MIR196B-201ENST00000384852 84 ntBASIC3.92□□□□□ -1.78
MSH5O43196 SNORA17.3-201ENST00000391159 129 ntBASIC3.92□□□□□ -1.78
MSH5O43196 RNU4-62P-201ENST00000410125 130 ntBASIC3.92□□□□□ -1.78
MSH5O43196 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH5O43196 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH5O43196 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH5O43196 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH5O43196 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSH5O43196 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSH5O43196 SNORA67.3-201ENST00000384366 140 ntBASIC3.91□□□□□ -1.78
MSH5O43196 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH5O43196 RNU7-193P-201ENST00000516723 65 ntBASIC3.91□□□□□ -1.78
MSH5O43196 MIR4639-201ENST00000584938 69 ntBASIC3.91□□□□□ -1.78
MSH5O43196 RMST_2.1-201ENST00000617263 136 ntBASIC3.91□□□□□ -1.78
MSH5O43196 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
MSH5O43196 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
MSH5O43196 RNU6-439P-201ENST00000384188 106 ntBASIC3.9□□□□□ -1.79
MSH5O43196 MIR4473-201ENST00000583731 91 ntBASIC3.9□□□□□ -1.79
MSH5O43196 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH5O43196 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH5O43196 AC008413.1-201ENST00000511864 177 ntBASIC3.89□□□□□ -1.79
MSH5O43196 MIR7843-201ENST00000622274 79 ntBASIC3.89□□□□□ -1.79
MSH5O43196 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH5O43196 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSH5O43196 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH5O43196 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH5O43196 SNORD63.2-201ENST00000516303 64 ntBASIC3.88□□□□□ -1.79
MSH5O43196 MIR5194-201ENST00000582634 120 ntBASIC3.88□□□□□ -1.79
MSH5O43196 MIR520F-201ENST00000384824 87 ntBASIC3.87□□□□□ -1.79
MSH5O43196 MIR100-201ENST00000385259 80 ntBASIC3.87□□□□□ -1.79
MSH5O43196 RNU6-237P-201ENST00000515985 71 ntBASIC3.87□□□□□ -1.79
MSH5O43196 AC079600.2-201ENST00000550076 130 ntBASIC3.87□□□□□ -1.79
MSH5O43196 MIR887-201ENST00000401258 79 ntBASIC3.86□□□□□ -1.79
MSH5O43196 AC087499.2-201ENST00000432861 149 ntBASIC3.86□□□□□ -1.79
MSH5O43196 RNU6-300P-201ENST00000459080 104 ntBASIC3.86□□□□□ -1.79
MSH5O43196 RNU6-337P-201ENST00000391243 106 ntBASIC3.85□□□□□ -1.79
MSH5O43196 MTRNR2L9-201ENST00000622562 75 ntBASIC3.85□□□□□ -1.79
MSH5O43196 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
MSH5O43196 SNORA75.2-201ENST00000391138 150 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 236.2 ms