Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 AL109933.3-201ENST00000619095 188 ntBASIC0.49□□□□□ -2.33
SMCHD1A6NHR9 Y_RNA.96-201ENST00000363092 109 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 Y_RNA.247-201ENST00000364500 92 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 SNRPGP12-201ENST00000449481 213 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 MIR103A1-201ENST00000362165 78 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 RNU6-834P-201ENST00000362367 110 ntBASIC0.48□□□□□ -2.33
SMCHD1A6NHR9 RNU6-616P-201ENST00000384353 107 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 AC244505.6-201ENST00000452829 130 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 MIR3612-201ENST00000579753 87 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 AP001318.4-201ENST00000616637 121 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 Y_RNA.377-201ENST00000365644 108 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 RNU6-679P-201ENST00000391003 106 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 MIR4694-201ENST00000578534 80 ntBASIC0.47□□□□□ -2.33
SMCHD1A6NHR9 Y_RNA.57-201ENST00000362806 113 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 RNA5SP62-201ENST00000363457 110 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 SNORD63B-201ENST00000411005 70 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 AL157398.1-201ENST00000452981 186 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 SNORA40.13-201ENST00000516379 120 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 MIR4536-1-201ENST00000583537 88 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 U6.100-201ENST00000636230 99 ntBASIC0.46□□□□□ -2.34
SMCHD1A6NHR9 RNU6-170P-201ENST00000362832 104 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 RNU6-957P-201ENST00000363652 99 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 SNORA2A-201ENST00000383885 135 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 RNU6-44P-201ENST00000384045 107 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 MIR4439-201ENST00000583746 80 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 SNORD116-10-201ENST00000363791 102 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 Y_RNA.178-201ENST00000363832 102 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 SNORD58A-201ENST00000383875 65 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 MIR519A1-201ENST00000385257 85 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 MIR216B-201ENST00000390186 82 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 RNU6-972P-201ENST00000391208 107 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 RNU6-1057P-201ENST00000517162 102 ntBASIC0.45□□□□□ -2.34
SMCHD1A6NHR9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 MIR34C-201ENST00000384831 77 ntBASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 RNU6-1064P-201ENST00000410626 104 ntBASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 RNU6-75P-201ENST00000515944 104 ntBASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 AC023932.2-201ENST00000603176 175 ntBASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
SMCHD1A6NHR9 SNORA63.4-201ENST00000362763 126 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 SNORD118-201ENST00000363593 134 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 RNA5SP245-201ENST00000364239 121 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 SNORA8.2-201ENST00000384372 139 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 RNA5SP94-201ENST00000516917 108 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 MIR5706-201ENST00000579841 80 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 MIR8066-201ENST00000617280 78 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 RNU6-1290P-201ENST00000362957 109 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 uc_338.17-201ENST00000619633 179 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 MIR5087-201ENST00000635826 76 ntBASIC0.43□□□□□ -2.34
SMCHD1A6NHR9 RNU6-1125P-201ENST00000363601 107 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 Y_RNA.163-201ENST00000363702 113 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 Y_RNA.467-201ENST00000384297 102 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNU6-480P-201ENST00000384332 107 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNA5SP63-201ENST00000391225 112 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 SNORA40.8-201ENST00000411034 126 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 AC073261.1-201ENST00000429409 121 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNU6-945P-201ENST00000383947 107 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 MIR548G-201ENST00000408442 89 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNU7-195P-201ENST00000458793 62 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 RNA5SP47-201ENST00000517230 109 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 AC025521.1-201ENST00000621624 286 ntBASIC0.42□□□□□ -2.34
SMCHD1A6NHR9 MIR450A1-201ENST00000362262 91 ntBASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 MIR644A-201ENST00000385262 94 ntBASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 MIR760-201ENST00000390220 80 ntBASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 SNORD41.1-201ENST00000391000 69 ntBASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 SNORD71-201ENST00000411292 86 ntBASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.41□□□□□ -2.34
SMCHD1A6NHR9 MIRLET7F1-201ENST00000362202 87 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 MTATP8P2-201ENST00000435212 202 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 SCARNA23-201ENST00000516060 130 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 RNU4-54P-201ENST00000516428 129 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 AC141557.1-201ENST00000540982 400 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 MIR4315-1-201ENST00000636800 73 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 MIR4315-2-201ENST00000640925 73 ntBASIC0.4□□□□□ -2.34
SMCHD1A6NHR9 SNORA62.5-201ENST00000516634 120 ntBASIC0.4□□□□□ -2.35
SMCHD1A6NHR9 MIR4777-201ENST00000583710 86 ntBASIC0.4□□□□□ -2.35
SMCHD1A6NHR9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.4□□□□□ -2.35
SMCHD1A6NHR9 MIR6718-201ENST00000616153 80 ntBASIC0.4□□□□□ -2.35
SMCHD1A6NHR9 RNU6-766P-201ENST00000362478 107 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 AL031737.1-201ENST00000450125 223 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 RNU6-848P-201ENST00000515948 107 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 Y_RNA.659-201ENST00000515994 113 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 RNU6-617P-201ENST00000516147 107 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 RNU6-473P-201ENST00000516164 107 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 RNU6-313P-201ENST00000516317 112 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.39□□□□□ -2.35
SMCHD1A6NHR9 Y_RNA.190-201ENST00000363964 101 ntBASIC0.38□□□□□ -2.35
SMCHD1A6NHR9 RNY4P18-201ENST00000391107 89 ntBASIC0.38□□□□□ -2.35
SMCHD1A6NHR9 RNY4P30-201ENST00000410216 95 ntBASIC0.38□□□□□ -2.35
SMCHD1A6NHR9 RNU2-59P-201ENST00000410482 191 ntBASIC0.38□□□□□ -2.35
SMCHD1A6NHR9 RNU6-887P-201ENST00000410660 100 ntBASIC0.38□□□□□ -2.35
SMCHD1A6NHR9 MTATP6P29-201ENST00000415057 132 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 186.5 ms