Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.17-201ENST00000362433 111 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 SNORD115-35-201ENST00000365122 82 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-364P-201ENST00000384387 107 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1152P-201ENST00000384576 107 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-162P-201ENST00000516228 103 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.705-201ENST00000516862 110 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 MIR4804-201ENST00000581683 73 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 MIR548Z-201ENST00000584743 97 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 AL590095.2-201ENST00000604136 117 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 SNORD114-21-201ENST00000606412 72 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 AC091304.10-201ENST00000641554 121 ntBASIC1.39□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.115-201ENST00000363272 98 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-573P-201ENST00000383938 106 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 MIR520H-201ENST00000385126 88 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 MIR125B2-201ENST00000385128 89 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 SNORD93-201ENST00000408813 74 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.593-201ENST00000410292 98 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 RNU7-2P-201ENST00000516096 62 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 RNU7-35P-201ENST00000517174 62 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 MIR4439-201ENST00000583746 80 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 MIR1245B-201ENST00000636115 69 ntBASIC1.38□□□□□ -2.19
CCDC9Q9Y3X0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-972P-201ENST00000391208 107 ntBASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-887P-201ENST00000410660 100 ntBASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-592P-201ENST00000411333 103 ntBASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.37□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.467-201ENST00000384297 102 ntBASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 MIR206-201ENST00000384872 86 ntBASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1275P-201ENST00000391087 107 ntBASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 IGLL4P-201ENST00000614590 133 ntBASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.68-201ENST00000362881 102 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.219-201ENST00000364232 113 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 RNY1P1-201ENST00000364372 112 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 RNU1-119P-201ENST00000391122 165 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.685-201ENST00000516532 108 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 MIR376B-201ENST00000614515 100 ntBASIC1.35□□□□□ -2.19
CCDC9Q9Y3X0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNA5SP457-201ENST00000363657 124 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 SNORD38.1-201ENST00000363863 68 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 SNORD116-22-201ENST00000384430 92 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-813P-201ENST00000384691 107 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-447P-201ENST00000410293 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1118P-201ENST00000410382 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1076P-201ENST00000410397 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-355P-201ENST00000410427 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-791P-201ENST00000410467 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-705P-201ENST00000410601 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1100P-201ENST00000410691 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-860P-201ENST00000410860 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1086P-201ENST00000410930 100 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1217P-201ENST00000411276 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-785P-201ENST00000411324 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 AC109327.2-201ENST00000448339 378 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 PSMC1P5-201ENST00000512850 177 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU7-79P-201ENST00000516082 62 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-638P-201ENST00000516582 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1006P-201ENST00000516998 103 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 MIR4698-201ENST00000577795 80 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 AC011195.1-201ENST00000578177 177 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 U6.90-201ENST00000614007 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 U6.70-201ENST00000620287 104 ntBASIC1.34□□□□□ -2.19
CCDC9Q9Y3X0 SNORD114-10-201ENST00000363409 72 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 SNORD116-10-201ENST00000363791 102 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.190-201ENST00000363964 101 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.247-201ENST00000364500 92 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-865P-201ENST00000364772 107 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-675P-201ENST00000384236 104 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 SNORD78.1-201ENST00000390866 65 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 AC022137.1-201ENST00000483735 151 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 SNORD67.1-201ENST00000516618 108 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 RNU7-156P-201ENST00000517214 74 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 MIR4714-201ENST00000580728 77 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 MIR6857-201ENST00000613267 93 ntBASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC9Q9Y3X0 RNU4-38P-201ENST00000364472 129 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 SNORD58A-201ENST00000383875 65 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-949P-201ENST00000384040 107 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.448-201ENST00000384185 108 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-242P-201ENST00000384359 107 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 MIR34C-201ENST00000384831 77 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 U8.15-201ENST00000390947 134 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1307P-201ENST00000391012 103 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RNU7-137P-201ENST00000516788 62 ntBASIC1.32□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1163P-201ENST00000364516 107 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1187P-201ENST00000364771 110 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 MIR532-201ENST00000385025 91 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 MIR1285-1-201ENST00000408593 84 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-402P-201ENST00000410678 103 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 RNU7-56P-201ENST00000458744 62 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-86P-201ENST00000606534 107 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 AC103810.7-201ENST00000607821 91 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 MIR3202-2-201ENST00000635980 79 ntBASIC1.31□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.98-201ENST00000363109 102 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1276P-201ENST00000365372 104 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 204 ms