Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNORA18.5-201ENST00000516616 101 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 MIR4255-201ENST00000579351 72 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 MIR3064-201ENST00000581130 66 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 AL645939.4-201ENST00000604495 135 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 MIR4662A-201ENST00000637499 67 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 RNU1-42P-201ENST00000364033 160 ntBASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 MIR635-201ENST00000384830 98 ntBASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 SNORA67.5-201ENST00000391036 107 ntBASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 RNU1-78P-201ENST00000391248 165 ntBASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 AC104996.3-201ENST00000590718 94 ntBASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CHMP3Q9Y3E7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 MIR125B2-201ENST00000385128 89 ntBASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 SNORD90-201ENST00000391145 111 ntBASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 MIR1323-201ENST00000408090 73 ntBASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 BX248123.2-201ENST00000606318 124 ntBASIC1.97□□□□□ -2.09
CHMP3Q9Y3E7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.42-201ENST00000362660 108 ntBASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-1229P-201ENST00000364295 107 ntBASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 AC092628.1-201ENST00000436250 252 ntBASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 AC106800.4-201ENST00000614905 153 ntBASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-315P-201ENST00000362666 107 ntBASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 SNORA67.6-201ENST00000391093 99 ntBASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-1108P-201ENST00000516308 104 ntBASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.697-201ENST00000516776 113 ntBASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.95□□□□□ -2.1
CHMP3Q9Y3E7 SNORA63.2-201ENST00000362603 126 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-161P-201ENST00000363051 106 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.491-201ENST00000384417 107 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.809-201ENST00000516058 95 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 RNU7-156P-201ENST00000517214 74 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 MIR548H5-201ENST00000580314 60 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 MIR4422-201ENST00000581938 83 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 MIR4676-201ENST00000583078 72 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 SNORD92-201ENST00000585078 85 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.788-201ENST00000622394 112 ntBASIC1.94□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-369P-201ENST00000362515 102 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 Y_RNA.56-201ENST00000362798 112 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-910P-201ENST00000390844 107 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 RPS26P5-201ENST00000418544 335 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 RNU7-21P-201ENST00000459430 62 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-448P-201ENST00000517052 107 ntBASIC1.93□□□□□ -2.1
CHMP3Q9Y3E7 SNORD111-201ENST00000408139 94 ntBASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 AL591704.2-201ENST00000421658 181 ntBASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-765P-201ENST00000516916 99 ntBASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 TRDV1-202ENST00000621643 102 ntBASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.92□□□□□ -2.1
CHMP3Q9Y3E7 RNA5SP245-201ENST00000364239 121 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 AP1B1P2-201ENST00000416196 106 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 RNU7-95P-201ENST00000459222 64 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 RNU6-902P-201ENST00000517212 91 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 AC145423.2-201ENST00000610631 239 ntBASIC1.91□□□□□ -2.1
CHMP3Q9Y3E7 MIR517C-201ENST00000385103 95 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 MIR518E-201ENST00000385252 88 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 MIR519A1-201ENST00000385257 85 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 RNU1-92P-201ENST00000517017 135 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 MIR4498-201ENST00000577599 66 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 snoU13.31-201ENST00000607291 104 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 U6.100-201ENST00000636230 99 ntBASIC1.9□□□□□ -2.11
CHMP3Q9Y3E7 MIRLET7A1-201ENST00000362295 80 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-1260P-201ENST00000362944 107 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 MIR548U-201ENST00000390728 81 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 MIR1304-201ENST00000408243 91 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-557P-201ENST00000516842 110 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 AC008608.1-201ENST00000603910 127 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 RNU7-10P-201ENST00000607194 63 ntBASIC1.89□□□□□ -2.11
CHMP3Q9Y3E7 Y_RNA.565-201ENST00000384719 101 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-291P-201ENST00000384720 107 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 AL354695.1-201ENST00000427935 228 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 RNU7-102P-201ENST00000458948 62 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 SNORD79.1-201ENST00000516069 84 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 SNORA31.24-201ENST00000517232 57 ntBASIC1.88□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-686P-201ENST00000364839 107 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-364P-201ENST00000384387 107 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 SNORA80D-201ENST00000384488 135 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 Y_RNA.532-201ENST00000384590 113 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-997P-201ENST00000384725 107 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 MIR599-201ENST00000385069 95 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-994P-201ENST00000410507 111 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 SCARNA18B-201ENST00000458806 135 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-1053P-201ENST00000515930 101 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 AC027335.2-201ENST00000624030 375 ntBASIC1.87□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-1094P-201ENST00000362416 104 ntBASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 Y_RNA.164-201ENST00000363709 102 ntBASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 RNU6-535P-201ENST00000384722 107 ntBASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 MIR938-201ENST00000401216 83 ntBASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 AC097635.1-201ENST00000450678 155 ntBASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CHMP3Q9Y3E7 RNU7-90P-201ENST00000459216 62 ntBASIC1.85□□□□□ -2.11
CHMP3Q9Y3E7 FGF7P7-201ENST00000514120 227 ntBASIC1.85□□□□□ -2.11
CHMP3Q9Y3E7 MIR4804-201ENST00000581683 73 ntBASIC1.85□□□□□ -2.11
CHMP3Q9Y3E7 U7.4-201ENST00000614961 63 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 202.5 ms