Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORA48.3-201ENST00000391081 134 ntBASIC2.15□□□□□ -2.07
LIMD1Q9UGP4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LIMD1Q9UGP4 RNU6-994P-201ENST00000410507 111 ntBASIC2.15□□□□□ -2.07
LIMD1Q9UGP4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LIMD1Q9UGP4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 MIRLET7F1-201ENST00000362202 87 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 RNU6-161P-201ENST00000363051 106 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 SNORA17.3-201ENST00000391159 129 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 RNA5SP182-201ENST00000516064 82 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 RNU7-40P-201ENST00000516397 64 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 AC023827.1-201ENST00000569247 97 ntBASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.14□□□□□ -2.07
LIMD1Q9UGP4 ZNF355P-201ENST00000427301 3216 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 Y_RNA.363-201ENST00000365529 113 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 Y_RNA.545-201ENST00000384652 105 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 RNU6-910P-201ENST00000390844 107 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 AC015818.7-201ENST00000428754 109 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 AC079804.2-201ENST00000490376 200 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 AL645939.4-201ENST00000604495 135 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 AC027335.2-201ENST00000624030 375 ntBASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
LIMD1Q9UGP4 RNU6-1229P-201ENST00000364295 107 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 RNY4P3-201ENST00000365254 95 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 MIR599-201ENST00000385069 95 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 AC025033.1-201ENST00000463883 194 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 RNU6-807P-201ENST00000516805 107 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 MIR1297-201ENST00000637311 77 ntBASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.12□□□□□ -2.07
LIMD1Q9UGP4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 MIR889-201ENST00000401280 79 ntBASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 AC090255.1-201ENST00000495779 349 ntBASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 SNORD79.1-201ENST00000516069 84 ntBASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 RNU6-1108P-201ENST00000516308 104 ntBASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LIMD1Q9UGP4 MIR378A-201ENST00000362177 66 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 RNU6-208P-201ENST00000362431 107 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 RNU5F-1-201ENST00000362507 117 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 RNU6-535P-201ENST00000384722 107 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 SNORD12-201ENST00000391002 90 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 snoU13.31-201ENST00000607291 104 ntBASIC2.1□□□□□ -2.07
LIMD1Q9UGP4 SNORD101-201ENST00000384027 73 ntBASIC2.09□□□□□ -2.07
LIMD1Q9UGP4 AC067940.1-201ENST00000458411 300 ntBASIC2.09□□□□□ -2.07
LIMD1Q9UGP4 RNU6-977P-201ENST00000516411 103 ntBASIC2.09□□□□□ -2.07
LIMD1Q9UGP4 MIR1-1-201ENST00000362147 71 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 RNU6-664P-201ENST00000362381 107 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 RNA5SP37-201ENST00000365420 130 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 Y_RNA.596-201ENST00000410462 109 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 SNORA70.22-201ENST00000517160 124 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 AL359821.1-201ENST00000605519 182 ntBASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
LIMD1Q9UGP4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LIMD1Q9UGP4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LIMD1Q9UGP4 RNU1-119P-201ENST00000391122 165 ntBASIC2.07□□□□□ -2.08
LIMD1Q9UGP4 RNU7-102P-201ENST00000458948 62 ntBASIC2.07□□□□□ -2.08
LIMD1Q9UGP4 MIR4804-201ENST00000581683 73 ntBASIC2.07□□□□□ -2.08
LIMD1Q9UGP4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 RNU6-291P-201ENST00000384720 107 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 MIR100-201ENST00000385259 80 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 RNU6-717P-201ENST00000459076 104 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 AC008608.1-201ENST00000603910 127 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 MTRNR2L2-201ENST00000604882 87 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 AP000553.5-201ENST00000641933 54 ntBASIC2.06□□□□□ -2.08
LIMD1Q9UGP4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 MIR337-201ENST00000362281 93 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 RNU6-1051P-201ENST00000365471 102 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 Y_RNA.565-201ENST00000384719 101 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 RNU1-40P-201ENST00000516816 164 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 RNU1-97P-201ENST00000516872 164 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 MIR4696-201ENST00000581431 70 ntBASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
LIMD1Q9UGP4 Y_RNA.118-201ENST00000363300 101 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 RNA5SP190-201ENST00000365222 118 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 MIR520H-201ENST00000385126 88 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 AL606490.4-201ENST00000423117 127 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 AC244505.6-201ENST00000452829 130 ntBASIC2.04□□□□□ -2.08
LIMD1Q9UGP4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 Y_RNA.174-201ENST00000363781 105 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 RNA5SP160-201ENST00000364866 120 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 RNU6-321P-201ENST00000410912 106 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 AC003989.2-201ENST00000440224 169 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 RNU7-56P-201ENST00000458744 62 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 SNORD13-201ENST00000459299 104 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 RNU6-1265P-201ENST00000516342 103 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 SNORA25.15-201ENST00000516487 89 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 RNU6-303P-201ENST00000517091 106 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 MIR5089-201ENST00000580047 84 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 MIR5002-201ENST00000584713 97 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 U6.100-201ENST00000636230 99 ntBASIC2.03□□□□□ -2.08
LIMD1Q9UGP4 Y_RNA.355-201ENST00000365462 98 ntBASIC2.02□□□□□ -2.09
LIMD1Q9UGP4 RNU6-935P-201ENST00000410371 100 ntBASIC2.02□□□□□ -2.09
LIMD1Q9UGP4 RNA5SP338-201ENST00000410495 85 ntBASIC2.02□□□□□ -2.09
LIMD1Q9UGP4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.02□□□□□ -2.09
LIMD1Q9UGP4 YWHAEP2-201ENST00000580066 112 ntBASIC2.02□□□□□ -2.09
LIMD1Q9UGP4 YWHAEP3-201ENST00000582767 121 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 243.8 ms