Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 SNORA75.3-201ENST00000391231 150 ntBASIC3.72□□□□□ -1.81
NCBP3Q53F19 snoU13.9-201ENST00000458927 103 ntBASIC3.72□□□□□ -1.81
NCBP3Q53F19 RNA5SP403-201ENST00000363598 108 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 EEF1A1P41-201ENST00000414667 207 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 AC067940.1-201ENST00000458411 300 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 AC048334.1-201ENST00000477975 159 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 SNORA31.14-201ENST00000516728 116 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 MIR3937-201ENST00000580135 106 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 MIR4513-201ENST00000581077 86 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 AC106800.4-201ENST00000614905 153 ntBASIC3.71□□□□□ -1.82
NCBP3Q53F19 RNA5SP215-201ENST00000363440 122 ntBASIC3.7□□□□□ -1.82
NCBP3Q53F19 RNA5SP117-201ENST00000365294 118 ntBASIC3.7□□□□□ -1.82
NCBP3Q53F19 MIR7-2-201ENST00000384970 110 ntBASIC3.7□□□□□ -1.82
NCBP3Q53F19 RNU6-122P-201ENST00000516818 107 ntBASIC3.7□□□□□ -1.82
NCBP3Q53F19 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NCBP3Q53F19 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
NCBP3Q53F19 Y_RNA.32-201ENST00000362589 110 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 SNORA80A-201ENST00000363922 136 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNU6-1065P-201ENST00000384513 106 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNU6-1184P-201ENST00000384588 108 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 MIR9-1-201ENST00000385198 89 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNA5SP210-201ENST00000391034 120 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNU7-104P-201ENST00000459398 79 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNA5SP147-201ENST00000516493 109 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 RNU7-161P-201ENST00000517289 62 ntBASIC3.69□□□□□ -1.82
NCBP3Q53F19 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
NCBP3Q53F19 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
NCBP3Q53F19 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NCBP3Q53F19 MIR302D-201ENST00000362275 68 ntBASIC3.68□□□□□ -1.82
NCBP3Q53F19 RNU6-92P-201ENST00000605893 104 ntBASIC3.68□□□□□ -1.82
NCBP3Q53F19 AL157834.3-201ENST00000615543 103 ntBASIC3.68□□□□□ -1.82
NCBP3Q53F19 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NCBP3Q53F19 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
NCBP3Q53F19 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NCBP3Q53F19 RNA5SP21-201ENST00000410917 96 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 HMGN2P23-201ENST00000456759 269 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 SNORD42B-201ENST00000458893 67 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 MIR4804-201ENST00000581683 73 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 MIR4635-201ENST00000583759 79 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 MIR548V-201ENST00000584165 80 ntBASIC3.67□□□□□ -1.82
NCBP3Q53F19 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
NCBP3Q53F19 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
NCBP3Q53F19 MIR519E-201ENST00000385075 84 ntBASIC3.66□□□□□ -1.82
NCBP3Q53F19 RNU1-119P-201ENST00000391122 165 ntBASIC3.66□□□□□ -1.82
NCBP3Q53F19 SUMO2P12-201ENST00000405924 140 ntBASIC3.66□□□□□ -1.82
NCBP3Q53F19 RNU6-1089P-201ENST00000516473 104 ntBASIC3.66□□□□□ -1.82
NCBP3Q53F19 RNU6-656P-201ENST00000516785 107 ntBASIC3.66□□□□□ -1.82
NCBP3Q53F19 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
NCBP3Q53F19 RNU6V-201ENST00000384105 107 ntBASIC3.64□□□□□ -1.83
NCBP3Q53F19 SNORD88.1-201ENST00000408684 91 ntBASIC3.64□□□□□ -1.83
NCBP3Q53F19 AL033523.1-201ENST00000605153 153 ntBASIC3.64□□□□□ -1.83
NCBP3Q53F19 uc_338.16-201ENST00000621804 95 ntBASIC3.64□□□□□ -1.83
NCBP3Q53F19 SNORA75.1-201ENST00000391130 148 ntBASIC3.63□□□□□ -1.83
NCBP3Q53F19 RNU6-994P-201ENST00000410507 111 ntBASIC3.63□□□□□ -1.83
NCBP3Q53F19 RNA5SP356-201ENST00000515972 94 ntBASIC3.63□□□□□ -1.83
NCBP3Q53F19 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.62□□□□□ -1.83
NCBP3Q53F19 SNORA2.1-201ENST00000363089 137 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 RNU6-302P-201ENST00000365249 107 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 MIR144-201ENST00000384886 86 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 AL356379.1-201ENST00000414105 126 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 HMGN2P19-201ENST00000425149 265 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 RNU7-56P-201ENST00000458744 62 ntBASIC3.62□□□□□ -1.83
NCBP3Q53F19 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NCBP3Q53F19 SNORD33-201ENST00000362761 85 ntBASIC3.61□□□□□ -1.83
NCBP3Q53F19 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
NCBP3Q53F19 AL138827.1-201ENST00000402666 306 ntBASIC3.61□□□□□ -1.83
NCBP3Q53F19 AC079600.2-201ENST00000550076 130 ntBASIC3.61□□□□□ -1.83
NCBP3Q53F19 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NCBP3Q53F19 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
NCBP3Q53F19 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NCBP3Q53F19 Y_RNA.174-201ENST00000363781 105 ntBASIC3.6□□□□□ -1.83
NCBP3Q53F19 RNA5SP282-201ENST00000516355 108 ntBASIC3.6□□□□□ -1.83
NCBP3Q53F19 AL512310.8-201ENST00000550183 120 ntBASIC3.6□□□□□ -1.83
NCBP3Q53F19 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.6□□□□□ -1.83
NCBP3Q53F19 RNU6-990P-201ENST00000364385 104 ntBASIC3.59□□□□□ -1.83
NCBP3Q53F19 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.59□□□□□ -1.83
NCBP3Q53F19 SNORA31.2-201ENST00000516019 134 ntBASIC3.59□□□□□ -1.83
NCBP3Q53F19 ZNF355P-201ENST00000427301 3216 ntBASIC3.59□□□□□ -1.83
NCBP3Q53F19 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.59□□□□□ -1.84
NCBP3Q53F19 MIR100-201ENST00000385259 80 ntBASIC3.58□□□□□ -1.84
NCBP3Q53F19 AC067863.3-201ENST00000624172 122 ntBASIC3.58□□□□□ -1.84
NCBP3Q53F19 SNORD60.1-201ENST00000362451 73 ntBASIC3.57□□□□□ -1.84
NCBP3Q53F19 MIR548C-201ENST00000384815 97 ntBASIC3.57□□□□□ -1.84
NCBP3Q53F19 AC087499.2-201ENST00000432861 149 ntBASIC3.57□□□□□ -1.84
NCBP3Q53F19 MIR6733-201ENST00000635723 61 ntBASIC3.57□□□□□ -1.84
NCBP3Q53F19 RNU1-112P-201ENST00000364401 164 ntBASIC3.56□□□□□ -1.84
NCBP3Q53F19 MIR934-201ENST00000401241 83 ntBASIC3.56□□□□□ -1.84
NCBP3Q53F19 RNU1-123P-201ENST00000458950 160 ntBASIC3.56□□□□□ -1.84
NCBP3Q53F19 AL096840.1-201ENST00000603287 93 ntBASIC3.56□□□□□ -1.84
NCBP3Q53F19 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NCBP3Q53F19 Y_RNA.363-201ENST00000365529 113 ntBASIC3.55□□□□□ -1.84
NCBP3Q53F19 MIR676-201ENST00000390702 67 ntBASIC3.55□□□□□ -1.84
NCBP3Q53F19 AC108938.1-201ENST00000451204 136 ntBASIC3.55□□□□□ -1.84
NCBP3Q53F19 SNORA40.17-201ENST00000517256 115 ntBASIC3.55□□□□□ -1.84
NCBP3Q53F19 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.55□□□□□ -1.84
NCBP3Q53F19 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC3.55□□□□□ -1.84
NCBP3Q53F19 MIR6739-201ENST00000622461 75 ntBASIC3.55□□□□□ -1.84
NCBP3Q53F19 MIR30A-201ENST00000385092 71 ntBASIC3.54□□□□□ -1.84
NCBP3Q53F19 AL591704.2-201ENST00000421658 181 ntBASIC3.54□□□□□ -1.84
NCBP3Q53F19 MIR520F-201ENST00000384824 87 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms