Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR1302-9-201ENST00000408365 138 ntBASIC-1.16□□□□□ -2.6
FOXA3P55318 MIR1302-10-201ENST00000408734 138 ntBASIC-1.16□□□□□ -2.6
FOXA3P55318 MIR1302-2-201ENST00000607096 138 ntBASIC-1.16□□□□□ -2.6
FOXA3P55318 AP000770.2-201ENST00000623694 100 ntBASIC-1.16□□□□□ -2.6
FOXA3P55318 RNU6-208P-201ENST00000362431 107 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 RNU4-24P-201ENST00000364565 139 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 RNU6-521P-201ENST00000516663 105 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 AP002392.1-201ENST00000537692 208 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 MIR3165-201ENST00000579874 75 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.17□□□□□ -2.6
FOXA3P55318 RNU6-450P-201ENST00000364654 107 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 SNORA62.4-201ENST00000365504 151 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 SNORA63.7-201ENST00000365579 123 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 SNORD116-2-201ENST00000384274 95 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 MIR451A-201ENST00000385059 72 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 RNU6-935P-201ENST00000410371 100 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.18□□□□□ -2.6
FOXA3P55318 RNU6-719P-201ENST00000516671 104 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 MIR4744-201ENST00000581563 82 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.18□□□□□ -2.6
FOXA3P55318 RNU6-103P-201ENST00000363686 107 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 RNU6-806P-201ENST00000365147 105 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 RNU4-17P-201ENST00000365598 141 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 RNY3P15-201ENST00000516297 97 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 RNU6-720P-201ENST00000516363 108 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 SNORA40.15-201ENST00000516884 107 ntBASIC-1.19□□□□□ -2.6
FOXA3P55318 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.19□□□□□ -2.6
FOXA3P55318 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-235P-201ENST00000362644 107 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-578P-201ENST00000390980 103 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-466P-201ENST00000391224 103 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 ELOCP20-201ENST00000422460 345 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 SNORD2.1-201ENST00000458762 69 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU7-152P-201ENST00000458982 64 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-976P-201ENST00000516086 111 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 RNU6-706P-201ENST00000517229 104 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.2□□□□□ -2.6
FOXA3P55318 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-770P-201ENST00000363929 105 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 SNORA63.6-201ENST00000364921 119 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-643P-201ENST00000384018 107 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-876P-201ENST00000391295 104 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 MTND5P22-201ENST00000458380 195 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU7-134P-201ENST00000458997 64 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-277P-201ENST00000516272 106 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU7-6P-201ENST00000516845 62 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.21□□□□□ -2.6
FOXA3P55318 AC068339.1-201ENST00000526965 141 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 AC132825.6-201ENST00000638861 357 ntBASIC-1.21□□□□□ -2.6
FOXA3P55318 RNU6-823P-201ENST00000391042 103 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 MIR8485-201ENST00000401372 91 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.22□□□□□ -2.6
FOXA3P55318 RNU6-479P-201ENST00000516348 105 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 MIR4464-201ENST00000580818 92 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 YWHAEP3-201ENST00000582767 121 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 AC080013.6-201ENST00000606185 215 ntBASIC-1.22□□□□□ -2.6
FOXA3P55318 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNU6-508P-201ENST00000363231 103 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNU6-647P-201ENST00000364243 107 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNA5SP192-201ENST00000364404 120 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 MT-TL1-201ENST00000386347 75 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 U3.27-201ENST00000391237 200 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 MIR1252-201ENST00000408861 65 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 MTATP6P21-201ENST00000440681 189 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNA5SP67-201ENST00000516422 131 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNY4P20-201ENST00000516678 93 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 AL353803.5-201ENST00000599815 141 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 RNU6-90P-201ENST00000606352 106 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 U6.96-201ENST00000636425 70 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 MIR1302-1-201ENST00000637932 143 ntBASIC-1.23□□□□□ -2.61
FOXA3P55318 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.571-201ENST00000384753 98 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 MIR548G-201ENST00000408442 89 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 FGF7P4-201ENST00000509595 295 ntBASIC-1.24□□□□□ -2.61
FOXA3P55318 FGF7P7-201ENST00000514120 227 ntBASIC-1.24□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms