Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP264-201ENST00000363115 107 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 MIR451A-201ENST00000385059 72 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 U3.27-201ENST00000391237 200 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 RNU6-1054P-201ENST00000411293 104 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 RNU7-185P-201ENST00000459215 60 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 Y_RNA.697-201ENST00000516776 113 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 AC138907.6-201ENST00000568401 126 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 AC138869.1-201ENST00000568623 124 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.71□□□□□ -1.98
COL9A1P20849 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
COL9A1P20849 MIR633-201ENST00000384821 98 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 RNU6-604P-201ENST00000390917 100 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 SNORA26.9-201ENST00000391322 122 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 MIR1257-201ENST00000408490 117 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.7□□□□□ -1.98
COL9A1P20849 RNU6-274P-201ENST00000459566 107 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 RNU6-947P-201ENST00000516264 106 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 AC245166.1-201ENST00000521012 253 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 AL359821.1-201ENST00000605519 182 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.7□□□□□ -1.98
COL9A1P20849 AL359851.1-201ENST00000569460 4997 ntBASIC2.7□□□□□ -1.98
COL9A1P20849 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.7□□□□□ -1.98
COL9A1P20849 AC023934.1-201ENST00000574529 2389 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 MIR26A1-201ENST00000362205 77 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 MIR148B-201ENST00000362252 99 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 Y_RNA.13-201ENST00000362403 112 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 RNU6-1177P-201ENST00000391058 104 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 RNU6-1057P-201ENST00000517162 102 ntBASIC2.69□□□□□ -1.98
COL9A1P20849 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.69□□□□□ -1.98
COL9A1P20849 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL9A1P20849 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL9A1P20849 RNU6-654P-201ENST00000364373 107 ntBASIC2.68□□□□□ -1.98
COL9A1P20849 MIR599-201ENST00000385069 95 ntBASIC2.68□□□□□ -1.98
COL9A1P20849 RNU6-1265P-201ENST00000516342 103 ntBASIC2.68□□□□□ -1.98
COL9A1P20849 RNU6-977P-201ENST00000516411 103 ntBASIC2.68□□□□□ -1.98
COL9A1P20849 AC015688.6-201ENST00000577737 104 ntBASIC2.68□□□□□ -1.98
COL9A1P20849 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
COL9A1P20849 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.67□□□□□ -1.98
COL9A1P20849 Y_RNA.236-201ENST00000364427 111 ntBASIC2.67□□□□□ -1.98
COL9A1P20849 RNA5SP320-201ENST00000516263 124 ntBASIC2.67□□□□□ -1.98
COL9A1P20849 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
COL9A1P20849 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.67□□□□□ -1.98
COL9A1P20849 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
COL9A1P20849 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL9A1P20849 SNORA40.6-201ENST00000391153 128 ntBASIC2.66□□□□□ -1.98
COL9A1P20849 RNA5SP212-201ENST00000391223 107 ntBASIC2.66□□□□□ -1.98
COL9A1P20849 RNU6-1052P-201ENST00000411398 104 ntBASIC2.66□□□□□ -1.98
COL9A1P20849 RPS29P6-201ENST00000438196 145 ntBASIC2.66□□□□□ -1.98
COL9A1P20849 RNU6-719P-201ENST00000516671 104 ntBASIC2.66□□□□□ -1.98
COL9A1P20849 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL9A1P20849 RNA5SP95-201ENST00000410319 137 ntBASIC2.65□□□□□ -1.99
COL9A1P20849 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.65□□□□□ -1.99
COL9A1P20849 MIR6873-201ENST00000622788 63 ntBASIC2.65□□□□□ -1.99
COL9A1P20849 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL9A1P20849 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
COL9A1P20849 VTRNA1-1-201ENST00000363120 99 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 RNU1-52P-201ENST00000384190 164 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 RNA5SP282-201ENST00000516355 108 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 MIR4635-201ENST00000583759 79 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 MIR6734-201ENST00000621166 68 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 MIR4773-1-201ENST00000637203 78 ntBASIC2.64□□□□□ -1.99
COL9A1P20849 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
COL9A1P20849 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.63□□□□□ -1.99
COL9A1P20849 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
COL9A1P20849 AC244098.3-201ENST00000424803 96 ntBASIC2.63□□□□□ -1.99
COL9A1P20849 Y_RNA.722-201ENST00000517279 114 ntBASIC2.63□□□□□ -1.99
COL9A1P20849 MIR3605-201ENST00000583214 100 ntBASIC2.63□□□□□ -1.99
COL9A1P20849 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
COL9A1P20849 RNU6-829P-201ENST00000363700 112 ntBASIC2.62□□□□□ -1.99
COL9A1P20849 RNU6-808P-201ENST00000391233 108 ntBASIC2.62□□□□□ -1.99
COL9A1P20849 RNU7-193P-201ENST00000516723 65 ntBASIC2.62□□□□□ -1.99
COL9A1P20849 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL9A1P20849 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL9A1P20849 SNORA3A-201ENST00000364113 130 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 MIR524-201ENST00000385242 87 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 RNA5SP61-201ENST00000516453 100 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 AL078603.1-201ENST00000603824 313 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 RMST_2.1-201ENST00000617263 136 ntBASIC2.61□□□□□ -1.99
COL9A1P20849 RNU6-382P-201ENST00000365181 106 ntBASIC2.6□□□□□ -1.99
COL9A1P20849 SNORD115-44-201ENST00000365391 82 ntBASIC2.6□□□□□ -1.99
COL9A1P20849 SNORA17.3-201ENST00000391159 129 ntBASIC2.6□□□□□ -1.99
COL9A1P20849 SNORA77B-201ENST00000578179 125 ntBASIC2.6□□□□□ -1.99
COL9A1P20849 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC2.6□□□□□ -1.99
COL9A1P20849 Evf-2_5p.1-201ENST00000614213 142 ntBASIC2.6□□□□□ -1.99
COL9A1P20849 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.6□□□□□ -1.99
COL9A1P20849 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.6□□□□□ -1.99
COL9A1P20849 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL9A1P20849 SNORA16B-201ENST00000364674 135 ntBASIC2.59□□□□□ -1.99
COL9A1P20849 MIR125B2-201ENST00000385128 89 ntBASIC2.59□□□□□ -1.99
COL9A1P20849 MTND4LP1-201ENST00000446263 157 ntBASIC2.59□□□□□ -1.99
COL9A1P20849 RNA5SP220-201ENST00000516298 104 ntBASIC2.59□□□□□ -1.99
COL9A1P20849 MIR7978-201ENST00000636158 59 ntBASIC2.59□□□□□ -1.99
COL9A1P20849 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
COL9A1P20849 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
COL9A1P20849 RNU6-1187P-201ENST00000364771 110 ntBASIC2.58□□□□□ -2
COL9A1P20849 RNU6-439P-201ENST00000384188 106 ntBASIC2.58□□□□□ -2
COL9A1P20849 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.58□□□□□ -2
COL9A1P20849 MIR4506-201ENST00000584693 77 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 355.8 ms