Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC007012.1-201ENST00000567192 175 ntBASIC0.59□□□□□ -2.31
MSH3P20585 Y_RNA.32-201ENST00000362589 110 ntBASIC0.58□□□□□ -2.32
MSH3P20585 RNU4-67P-201ENST00000364569 141 ntBASIC0.58□□□□□ -2.32
MSH3P20585 SNORD113-1-201ENST00000365321 69 ntBASIC0.58□□□□□ -2.32
MSH3P20585 RNY1P8-201ENST00000383970 114 ntBASIC0.58□□□□□ -2.32
MSH3P20585 Y_RNA.508-201ENST00000384502 114 ntBASIC0.58□□□□□ -2.32
MSH3P20585 RNU6-1117P-201ENST00000384525 104 ntBASIC0.58□□□□□ -2.32
MSH3P20585 RNU6-535P-201ENST00000384722 107 ntBASIC0.58□□□□□ -2.32
MSH3P20585 MIR34C-201ENST00000384831 77 ntBASIC0.58□□□□□ -2.32
MSH3P20585 MIR92A1-201ENST00000385233 78 ntBASIC0.58□□□□□ -2.32
MSH3P20585 MIR548A3-201ENST00000385297 97 ntBASIC0.58□□□□□ -2.32
MSH3P20585 SNORA7.5-201ENST00000410672 110 ntBASIC0.58□□□□□ -2.32
MSH3P20585 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.58□□□□□ -2.32
MSH3P20585 RPL39P34-201ENST00000477141 156 ntBASIC0.58□□□□□ -2.32
MSH3P20585 SNORA31.14-201ENST00000516728 116 ntBASIC0.58□□□□□ -2.32
MSH3P20585 MIR4500-201ENST00000579472 76 ntBASIC0.58□□□□□ -2.32
MSH3P20585 Y_RNA.56-201ENST00000362798 112 ntBASIC0.57□□□□□ -2.32
MSH3P20585 Y_RNA.85-201ENST00000363014 111 ntBASIC0.57□□□□□ -2.32
MSH3P20585 Y_RNA.174-201ENST00000363781 105 ntBASIC0.57□□□□□ -2.32
MSH3P20585 Y_RNA.360-201ENST00000365512 102 ntBASIC0.57□□□□□ -2.32
MSH3P20585 SNORA36.2-201ENST00000384004 127 ntBASIC0.57□□□□□ -2.32
MSH3P20585 RNU6-22P-201ENST00000384355 107 ntBASIC0.57□□□□□ -2.32
MSH3P20585 AL353813.1-201ENST00000440700 253 ntBASIC0.57□□□□□ -2.32
MSH3P20585 MIR3678-201ENST00000578455 94 ntBASIC0.57□□□□□ -2.32
MSH3P20585 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.57□□□□□ -2.32
MSH3P20585 AL162726.3-218ENST00000636401 95 ntBASIC0.57□□□□□ -2.32
MSH3P20585 MIR101-2-201ENST00000362195 79 ntBASIC0.56□□□□□ -2.32
MSH3P20585 MIR548A1-201ENST00000385041 97 ntBASIC0.56□□□□□ -2.32
MSH3P20585 MIR140-201ENST00000385282 100 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-1168P-201ENST00000390831 104 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-816P-201ENST00000390914 107 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-679P-201ENST00000391003 106 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-1268P-201ENST00000391214 107 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-1239P-201ENST00000391310 107 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-62P-201ENST00000516526 102 ntBASIC0.56□□□□□ -2.32
MSH3P20585 RNU6-789P-201ENST00000517105 102 ntBASIC0.56□□□□□ -2.32
MSH3P20585 AL670379.3-201ENST00000605040 251 ntBASIC0.56□□□□□ -2.32
MSH3P20585 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
MSH3P20585 AL035470.1-201ENST00000622571 220 ntBASIC0.56□□□□□ -2.32
MSH3P20585 Y_RNA.155-201ENST00000363632 101 ntBASIC0.55□□□□□ -2.32
MSH3P20585 RNA5SP245-201ENST00000364239 121 ntBASIC0.55□□□□□ -2.32
MSH3P20585 Y_RNA.507-201ENST00000384500 99 ntBASIC0.55□□□□□ -2.32
MSH3P20585 Y_RNA.549-201ENST00000384657 102 ntBASIC0.55□□□□□ -2.32
MSH3P20585 MIR644A-201ENST00000385262 94 ntBASIC0.55□□□□□ -2.32
MSH3P20585 MIR1912-201ENST00000410389 80 ntBASIC0.55□□□□□ -2.32
MSH3P20585 RNU4-61P-201ENST00000411243 107 ntBASIC0.55□□□□□ -2.32
MSH3P20585 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.55□□□□□ -2.32
MSH3P20585 RNU6-1313P-201ENST00000362622 102 ntBASIC0.54□□□□□ -2.32
MSH3P20585 SNORA63.5-201ENST00000363548 123 ntBASIC0.54□□□□□ -2.32
MSH3P20585 RNA5SP205-201ENST00000364653 136 ntBASIC0.54□□□□□ -2.32
MSH3P20585 RNU6-409P-201ENST00000384114 104 ntBASIC0.54□□□□□ -2.32
MSH3P20585 RNU6-406P-201ENST00000516470 107 ntBASIC0.54□□□□□ -2.32
MSH3P20585 RNU6-1018P-201ENST00000516577 106 ntBASIC0.54□□□□□ -2.32
MSH3P20585 MIR548H5-201ENST00000580314 60 ntBASIC0.54□□□□□ -2.32
MSH3P20585 AL512310.12-203ENST00000640543 90 ntBASIC0.54□□□□□ -2.32
MSH3P20585 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
MSH3P20585 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
MSH3P20585 RNA5SP347-201ENST00000362445 119 ntBASIC0.53□□□□□ -2.32
MSH3P20585 Y_RNA.118-201ENST00000363300 101 ntBASIC0.53□□□□□ -2.32
MSH3P20585 SNORD18A-201ENST00000363753 72 ntBASIC0.53□□□□□ -2.32
MSH3P20585 Y_RNA.309-201ENST00000365046 111 ntBASIC0.53□□□□□ -2.32
MSH3P20585 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.53□□□□□ -2.32
MSH3P20585 MIR548I2-201ENST00000408348 149 ntBASIC0.53□□□□□ -2.32
MSH3P20585 BX276092.1-201ENST00000427368 251 ntBASIC0.53□□□□□ -2.32
MSH3P20585 RNU6-469P-201ENST00000516253 101 ntBASIC0.53□□□□□ -2.32
MSH3P20585 RNU6-479P-201ENST00000516348 105 ntBASIC0.53□□□□□ -2.32
MSH3P20585 RNU6-135P-201ENST00000516769 101 ntBASIC0.53□□□□□ -2.32
MSH3P20585 RNA5SP94-201ENST00000516917 108 ntBASIC0.53□□□□□ -2.32
MSH3P20585 RNU6-1006P-201ENST00000516998 103 ntBASIC0.53□□□□□ -2.32
MSH3P20585 SNORD38.2-201ENST00000384470 69 ntBASIC0.52□□□□□ -2.33
MSH3P20585 RNU6-1154P-201ENST00000391001 104 ntBASIC0.52□□□□□ -2.33
MSH3P20585 AC092628.1-201ENST00000436250 252 ntBASIC0.52□□□□□ -2.33
MSH3P20585 SNRPGP12-201ENST00000449481 213 ntBASIC0.52□□□□□ -2.33
MSH3P20585 RNU4-54P-201ENST00000516428 129 ntBASIC0.52□□□□□ -2.33
MSH3P20585 RNA5SP121-201ENST00000516537 101 ntBASIC0.52□□□□□ -2.33
MSH3P20585 RNU7-10P-201ENST00000607194 63 ntBASIC0.52□□□□□ -2.33
MSH3P20585 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
MSH3P20585 Y_RNA.281-201ENST00000364774 94 ntBASIC0.51□□□□□ -2.33
MSH3P20585 Y_RNA.355-201ENST00000365462 98 ntBASIC0.51□□□□□ -2.33
MSH3P20585 RNU6-945P-201ENST00000383947 107 ntBASIC0.51□□□□□ -2.33
MSH3P20585 RNU6-571P-201ENST00000384128 107 ntBASIC0.51□□□□□ -2.33
MSH3P20585 RNU6-1201P-201ENST00000384227 107 ntBASIC0.51□□□□□ -2.33
MSH3P20585 SNORD116-21-201ENST00000384507 92 ntBASIC0.51□□□□□ -2.33
MSH3P20585 MIR635-201ENST00000384830 98 ntBASIC0.51□□□□□ -2.33
MSH3P20585 AL606753.1-201ENST00000427435 87 ntBASIC0.51□□□□□ -2.33
MSH3P20585 AC068339.1-201ENST00000526965 141 ntBASIC0.51□□□□□ -2.33
MSH3P20585 AC138869.1-201ENST00000568623 124 ntBASIC0.51□□□□□ -2.33
MSH3P20585 SNORD38.1-201ENST00000363863 68 ntBASIC0.5□□□□□ -2.33
MSH3P20585 RNA5SP499-201ENST00000363982 119 ntBASIC0.5□□□□□ -2.33
MSH3P20585 Y_RNA.247-201ENST00000364500 92 ntBASIC0.5□□□□□ -2.33
MSH3P20585 RNU6-1144P-201ENST00000384247 104 ntBASIC0.5□□□□□ -2.33
MSH3P20585 RNU6-880P-201ENST00000384526 107 ntBASIC0.5□□□□□ -2.33
MSH3P20585 AC244505.6-201ENST00000452829 130 ntBASIC0.5□□□□□ -2.33
MSH3P20585 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
MSH3P20585 TRAJ51-201ENST00000504127 63 ntBASIC0.5□□□□□ -2.33
MSH3P20585 RNU6-313P-201ENST00000516317 112 ntBASIC0.5□□□□□ -2.33
MSH3P20585 AC018659.1-201ENST00000551083 169 ntBASIC0.5□□□□□ -2.33
MSH3P20585 AC092634.7-201ENST00000621022 103 ntBASIC0.5□□□□□ -2.33
MSH3P20585 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
MSH3P20585 RNU6-170P-201ENST00000362832 104 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms