Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC012676.2-201ENST00000619258 186 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 SNORA2B-201ENST00000384583 137 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 SNORD38B-201ENST00000384690 67 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 MIR1302-7-201ENST00000408841 72 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 AL513043.2-201ENST00000573941 143 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 SNORD53B-201ENST00000577887 78 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 PRELID3BP2-201ENST00000605362 201 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 SNORD38B-202ENST00000625943 69 ntBASIC1.72□□□□□ -2.13
USP39Q53GS9 MIR181B2-201ENST00000385004 89 ntBASIC1.71□□□□□ -2.14
USP39Q53GS9 SPINT5P-201ENST00000448174 155 ntBASIC1.71□□□□□ -2.14
USP39Q53GS9 MIR3192-201ENST00000584920 77 ntBASIC1.71□□□□□ -2.14
USP39Q53GS9 AL662814.1-201ENST00000617364 121 ntBASIC1.71□□□□□ -2.14
USP39Q53GS9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
USP39Q53GS9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.7□□□□□ -2.14
USP39Q53GS9 HSBP1P2-201ENST00000299671 229 ntBASIC1.7□□□□□ -2.14
USP39Q53GS9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
USP39Q53GS9 Y_RNA.607-201ENST00000410597 98 ntBASIC1.7□□□□□ -2.14
USP39Q53GS9 RNU7-95P-201ENST00000459222 64 ntBASIC1.7□□□□□ -2.14
USP39Q53GS9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.7□□□□□ -2.14
USP39Q53GS9 AP001362.1-201ENST00000625165 124 ntBASIC1.7□□□□□ -2.14
USP39Q53GS9 AP000648.3-201ENST00000623539 4507 ntBASIC1.7□□□□□ -2.14
USP39Q53GS9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP39Q53GS9 RNA5SP133-201ENST00000363368 119 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 RNU6-652P-201ENST00000365488 107 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 RNU6-949P-201ENST00000384040 107 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 Y_RNA.508-201ENST00000384502 114 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 MIR563-201ENST00000385080 79 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 AL161932.1-201ENST00000437408 146 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.69□□□□□ -2.14
USP39Q53GS9 BX248123.2-201ENST00000606318 124 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.69□□□□□ -2.14
USP39Q53GS9 Y_RNA.316-201ENST00000365118 111 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 RNU6-439P-201ENST00000384188 106 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 RNU6-524P-201ENST00000384270 107 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 RNU6-24P-201ENST00000384440 107 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 MIR513A1-201ENST00000385138 129 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.68□□□□□ -2.14
USP39Q53GS9 JTBP1-201ENST00000441314 247 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 snoU13.25-201ENST00000458945 104 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 snoU13.2-201ENST00000459201 104 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 RNU6-322P-201ENST00000516010 103 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 SNORD111.1-201ENST00000516421 86 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 MIR3122-201ENST00000577243 73 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 AL096861.1-201ENST00000610899 123 ntBASIC1.68□□□□□ -2.14
USP39Q53GS9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
USP39Q53GS9 Y_RNA.94-201ENST00000363068 106 ntBASIC1.67□□□□□ -2.14
USP39Q53GS9 RNY1P2-201ENST00000364820 117 ntBASIC1.67□□□□□ -2.14
USP39Q53GS9 RNA5SP259-201ENST00000365541 109 ntBASIC1.67□□□□□ -2.14
USP39Q53GS9 SNORD38.2-201ENST00000384470 69 ntBASIC1.67□□□□□ -2.14
USP39Q53GS9 MTND5P40-201ENST00000559945 246 ntBASIC1.67□□□□□ -2.14
USP39Q53GS9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USP39Q53GS9 Y_RNA.118-201ENST00000363300 101 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 RNA5SP48-201ENST00000363969 126 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 Y_RNA.355-201ENST00000365462 98 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 RNA5SP237-201ENST00000410414 113 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 RNU4-83P-201ENST00000410863 133 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 AC087499.7-201ENST00000441958 109 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 RNU6-922P-201ENST00000516753 99 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 AC138749.4-201ENST00000563970 127 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 SNORA77B-201ENST00000578179 125 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
USP39Q53GS9 MIR6740-201ENST00000618268 113 ntBASIC1.66□□□□□ -2.14
USP39Q53GS9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.66□□□□□ -2.14
USP39Q53GS9 Y_RNA.327-201ENST00000365201 102 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 RNU6-1296P-201ENST00000383879 107 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 RNU6-480P-201ENST00000384332 107 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
USP39Q53GS9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
USP39Q53GS9 AC027119.1-201ENST00000440877 241 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 AC133485.1-201ENST00000567176 124 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 AC015688.6-201ENST00000577737 104 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 AC090897.1-201ENST00000580909 226 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 MIR8074-201ENST00000615081 81 ntBASIC1.65□□□□□ -2.15
USP39Q53GS9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
USP39Q53GS9 RNU1-42P-201ENST00000364033 160 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 MIR588-201ENST00000384900 83 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 MIR518E-201ENST00000385252 88 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 SNRPGP12-201ENST00000449481 213 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 AC019288.1-201ENST00000557918 224 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.64□□□□□ -2.15
USP39Q53GS9 uc_338.6-201ENST00000613544 171 ntBASIC1.64□□□□□ -2.15
USP39Q53GS9 MIR30D-201ENST00000362283 70 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 SNORA25.3-201ENST00000363205 127 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 MIR519C-201ENST00000385053 87 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 AP003716.2-201ENST00000528260 108 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 AC140658.3-201ENST00000567603 271 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.63□□□□□ -2.15
USP39Q53GS9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
USP39Q53GS9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USP39Q53GS9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.62□□□□□ -2.15
USP39Q53GS9 SNORD4B-201ENST00000459083 72 ntBASIC1.62□□□□□ -2.15
USP39Q53GS9 AC093729.1-201ENST00000513074 128 ntBASIC1.62□□□□□ -2.15
USP39Q53GS9 MIR4422-201ENST00000581938 83 ntBASIC1.62□□□□□ -2.15
USP39Q53GS9 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
USP39Q53GS9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 189.3 ms