Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SNORD115-35-201ENST00000365122 82 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNY1P8-201ENST00000383970 114 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 MIR34C-201ENST00000384831 77 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-447P-201ENST00000410293 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-1118P-201ENST00000410382 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-1076P-201ENST00000410397 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-355P-201ENST00000410427 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-791P-201ENST00000410467 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-705P-201ENST00000410601 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-1100P-201ENST00000410691 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-860P-201ENST00000410860 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-1217P-201ENST00000411276 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-785P-201ENST00000411324 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU7-48P-201ENST00000458875 63 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNU6-313P-201ENST00000516317 112 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 AL670379.3-201ENST00000605040 251 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 U6.90-201ENST00000614007 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 MIR376B-201ENST00000614515 100 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 MIR6129-201ENST00000616087 109 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 U6.70-201ENST00000620287 104 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 Y_RNA.35-201ENST00000362601 101 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 RNA5SP205-201ENST00000364653 136 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 RNU2-51P-201ENST00000410708 197 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 AC090897.1-201ENST00000580909 226 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.74□□□□□ -2.29
HOXA1P49639 AL136317.1-201ENST00000612653 226 ntBASIC0.74□□□□□ -2.29
HOXA1P49639 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
HOXA1P49639 RNU4-67P-201ENST00000364569 141 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-865P-201ENST00000364772 107 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNY1P2-201ENST00000364820 117 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 Y_RNA.328-201ENST00000365208 113 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 SNORD116-21-201ENST00000384507 92 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-429P-201ENST00000384582 108 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 Y_RNA.563-201ENST00000384707 108 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-816P-201ENST00000390914 107 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-679P-201ENST00000391003 106 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-1268P-201ENST00000391214 107 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-1239P-201ENST00000391310 107 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-321P-201ENST00000410912 106 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 AL606490.4-201ENST00000423117 127 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 RNU6-479P-201ENST00000516348 105 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 MIR4500-201ENST00000579472 76 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 AL353765.1-201ENST00000605514 183 ntBASIC0.73□□□□□ -2.29
HOXA1P49639 Y_RNA.116-201ENST00000363292 103 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 Y_RNA.155-201ENST00000363632 101 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 MIR573-201ENST00000384964 99 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 BX276092.1-201ENST00000427368 251 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 AC211469.2-201ENST00000605461 205 ntBASIC0.72□□□□□ -2.29
HOXA1P49639 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
HOXA1P49639 Y_RNA.164-201ENST00000363709 102 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 Y_RNA.247-201ENST00000364500 92 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 RNU6-476P-201ENST00000384726 107 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 MIR532-201ENST00000385025 91 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 RNA5SP222-201ENST00000411039 105 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 MIR3612-201ENST00000579753 87 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 AL162726.3-218ENST00000636401 95 ntBASIC0.71□□□□□ -2.3
HOXA1P49639 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.71□□□□□ -2.3
HOXA1P49639 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-363P-201ENST00000362895 105 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-1144P-201ENST00000384247 104 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-291P-201ENST00000384720 107 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 MIR608-201ENST00000384820 100 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-1064P-201ENST00000410626 104 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-1194P-201ENST00000516208 104 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 Y_RNA.697-201ENST00000516776 113 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 RNU6-448P-201ENST00000517052 107 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 AC025627.3-201ENST00000582078 182 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.7□□□□□ -2.3
HOXA1P49639 AL512310.12-203ENST00000640543 90 ntBASIC0.7□□□□□ -2.3
HOXA1P49639 Y_RNA.32-201ENST00000362589 110 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 RNU6-1290P-201ENST00000362957 109 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 Y_RNA.98-201ENST00000363109 102 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 RNU4-58P-201ENST00000363192 141 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 RNA5SP245-201ENST00000364239 121 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 RNU6-409P-201ENST00000384114 104 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 AC002350.1-201ENST00000490759 375 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 Y_RNA.676-201ENST00000516393 96 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 AP001362.1-201ENST00000625165 124 ntBASIC0.69□□□□□ -2.3
HOXA1P49639 Y_RNA.85-201ENST00000363014 111 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 U8.6-201ENST00000364939 135 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 RNU6-53P-201ENST00000365367 106 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 Y_RNA.360-201ENST00000365512 102 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
HOXA1P49639 Y_RNA.507-201ENST00000384500 99 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 RNU6-535P-201ENST00000384722 107 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 MIR644A-201ENST00000385262 94 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 RNU6-733P-201ENST00000410759 104 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 SNORA31.14-201ENST00000516728 116 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 AC068339.1-201ENST00000526965 141 ntBASIC0.68□□□□□ -2.3
HOXA1P49639 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.68□□□□□ -2.3
HOXA1P49639 Y_RNA.4-201ENST00000362333 112 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 SNORA36.2-201ENST00000384004 127 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 RNU6-880P-201ENST00000384526 107 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms