Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SNORA72.6-201ENST00000384520 129 ntBASIC2.13□□□□□ -2.07
HIF3AQ9Y2N7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.13□□□□□ -2.07
HIF3AQ9Y2N7 AC026436.1-201ENST00000510537 270 ntBASIC2.13□□□□□ -2.07
HIF3AQ9Y2N7 SNORA4-201ENST00000584302 138 ntBASIC2.13□□□□□ -2.07
HIF3AQ9Y2N7 MIR6840-201ENST00000611937 71 ntBASIC2.13□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-1094P-201ENST00000362416 104 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 Y_RNA.545-201ENST00000384652 105 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 MIR17-201ENST00000385012 84 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNA5SP292-201ENST00000390974 118 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 MIR1302-7-201ENST00000408841 72 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 Y_RNA.648-201ENST00000459455 110 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-947P-201ENST00000516264 106 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-1108P-201ENST00000516308 104 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNA5SP148-201ENST00000516527 94 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 uc_338.6-201ENST00000613544 171 ntBASIC2.12□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-161P-201ENST00000363051 106 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-571P-201ENST00000384128 107 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 MIR516A2-201ENST00000384888 90 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 MIR516A1-201ENST00000385033 90 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 AL513328.1-201ENST00000446460 224 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 AC015688.6-201ENST00000577737 104 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 SNORA77B-201ENST00000578179 125 ntBASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
HIF3AQ9Y2N7 MIR30D-201ENST00000362283 70 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-811P-201ENST00000384069 107 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 MIR563-201ENST00000385080 79 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-1165P-201ENST00000410119 107 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 SCARNA18B-201ENST00000458806 135 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 RNU7-62P-201ENST00000458856 62 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 RNA5SP24-201ENST00000516478 95 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 MIR4713-201ENST00000582691 75 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 MIR5007-201ENST00000583098 95 ntBASIC2.1□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-624P-201ENST00000363411 107 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-396P-201ENST00000365369 105 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-250P-201ENST00000516958 103 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 MIR4536-1-201ENST00000583537 88 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 AC104984.5-201ENST00000586878 94 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 GHRLOS.1-201ENST00000610995 70 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 MIR8074-201ENST00000615081 81 ntBASIC2.09□□□□□ -2.07
HIF3AQ9Y2N7 SNORA63.2-201ENST00000362603 126 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 HSPE1P24-201ENST00000450782 238 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 MIR3134-201ENST00000579433 74 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 MIR4484-201ENST00000582855 83 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 MIR6715A-201ENST00000615929 79 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 MIR6766-201ENST00000622641 72 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 AC008163.1-202ENST00000636004 2889 ntBASIC2.08□□□□□ -2.08
HIF3AQ9Y2N7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 RNA5SP95-201ENST00000410319 137 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 AC245517.4-201ENST00000448601 281 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 snoU13.25-201ENST00000458945 104 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 AC008413.1-201ENST00000511864 177 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 SNORA18.5-201ENST00000516616 101 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-531P-201ENST00000516694 104 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 MIR4299-201ENST00000577899 72 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 MIR4264-201ENST00000583520 66 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 AC046143.2-201ENST00000609789 160 ntBASIC2.07□□□□□ -2.08
HIF3AQ9Y2N7 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 MIRLET7G-201ENST00000362280 84 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 MIRLET7A1-201ENST00000362295 80 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 SNORD36A-201ENST00000362874 73 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-686P-201ENST00000364839 107 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-132P-201ENST00000383863 107 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-243P-201ENST00000391140 107 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-523P-201ENST00000516304 54 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 SNORA25.16-201ENST00000516741 121 ntBASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
HIF3AQ9Y2N7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 Y_RNA.283-201ENST00000364798 112 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-1254P-201ENST00000391266 104 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 RNA5SP233-201ENST00000459153 113 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 AC114801.3-201ENST00000510231 177 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 MIR3945-201ENST00000581853 98 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 AL627230.6-201ENST00000611129 280 ntBASIC2.05□□□□□ -2.08
HIF3AQ9Y2N7 MIRLET7F1-201ENST00000362202 87 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-654P-201ENST00000364373 107 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 MIR635-201ENST00000384830 98 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 RNU7-106P-201ENST00000459514 67 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-75P-201ENST00000515944 104 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-557P-201ENST00000516842 110 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 SNORD53-201ENST00000579969 78 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 AC104996.3-201ENST00000590718 94 ntBASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
HIF3AQ9Y2N7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-466P-201ENST00000391224 103 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 MIR1261-201ENST00000408659 82 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 RNU6-380P-201ENST00000410207 107 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 AL356379.1-201ENST00000414105 126 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 MIR2115-201ENST00000516657 100 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 186.6 ms