Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.99□□□□□ -1.93
NKX2-3Q8TAU0 RNA5SP481-201ENST00000516814 122 ntBASIC2.99□□□□□ -1.93
NKX2-3Q8TAU0 AL096861.1-201ENST00000610899 123 ntBASIC2.99□□□□□ -1.93
NKX2-3Q8TAU0 AL627230.6-201ENST00000611129 280 ntBASIC2.99□□□□□ -1.93
NKX2-3Q8TAU0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 MIR563-201ENST00000385080 79 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 BX510359.4-201ENST00000423750 193 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 HMGN2P3-201ENST00000433603 273 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 HMGN2P5-201ENST00000436882 273 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 MIR3675-201ENST00000583661 73 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 MIR8053-201ENST00000613344 75 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 AL353997.5-201ENST00000618886 171 ntBASIC2.98□□□□□ -1.93
NKX2-3Q8TAU0 RNA5SP99-201ENST00000364020 114 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 RNY4P3-201ENST00000365254 95 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 Y_RNA.606-201ENST00000410579 103 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 RNU2-7P-201ENST00000410794 178 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 AC110620.1-201ENST00000416042 228 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 AC244023.1-201ENST00000426884 112 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 AC242498.1-201ENST00000604134 111 ntBASIC2.97□□□□□ -1.93
NKX2-3Q8TAU0 RNU6-1051P-201ENST00000365471 102 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 MIR27B-201ENST00000385129 97 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 AC092628.1-201ENST00000436250 252 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 AC079150.2-201ENST00000443733 78 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 snoU13.27-201ENST00000459278 104 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 RNA5SP437-201ENST00000517249 129 ntBASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX2-3Q8TAU0 SNORD114-1-201ENST00000362705 72 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 Y_RNA.207-201ENST00000364142 106 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 RNU1-91P-201ENST00000364746 163 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 RNU7-106P-201ENST00000459514 67 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 SUB1P4-201ENST00000566062 339 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 MIR1273D-201ENST00000577266 86 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 SNORA4-201ENST00000584302 138 ntBASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
NKX2-3Q8TAU0 RNU6-957P-201ENST00000363652 99 ntBASIC2.94□□□□□ -1.94
NKX2-3Q8TAU0 RNA5SP465-201ENST00000391195 109 ntBASIC2.94□□□□□ -1.94
NKX2-3Q8TAU0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX2-3Q8TAU0 Y_RNA.371-201ENST00000365591 113 ntBASIC2.93□□□□□ -1.94
NKX2-3Q8TAU0 MIR588-201ENST00000384900 83 ntBASIC2.93□□□□□ -1.94
NKX2-3Q8TAU0 RNU11-3P-201ENST00000391111 133 ntBASIC2.93□□□□□ -1.94
NKX2-3Q8TAU0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX2-3Q8TAU0 SNORD114-30-201ENST00000364448 72 ntBASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 RNU6-1194P-201ENST00000516208 104 ntBASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 AC046143.2-201ENST00000609789 160 ntBASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 AL161722.3-201ENST00000605789 2983 ntBASIC2.92□□□□□ -1.94
NKX2-3Q8TAU0 SNORD45A-201ENST00000384512 84 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 MIR597-201ENST00000384968 97 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 SNORA48.1-201ENST00000390879 135 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 RNVU1-2-201ENST00000516326 135 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 RNU6-881P-201ENST00000516813 102 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 AC022202.1-201ENST00000613515 211 ntBASIC2.91□□□□□ -1.94
NKX2-3Q8TAU0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
NKX2-3Q8TAU0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
NKX2-3Q8TAU0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
NKX2-3Q8TAU0 RNU6-1216P-201ENST00000362590 107 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 RNU6-112P-201ENST00000363599 104 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 SNORD115-22-201ENST00000364456 82 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 SNORD63B-201ENST00000411005 70 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 AC009474.2-201ENST00000451383 136 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 RNA5SP445-201ENST00000515889 115 ntBASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX2-3Q8TAU0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 MIR21-201ENST00000362134 72 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 MIR30D-201ENST00000362283 70 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 RNA5SP456-201ENST00000364002 114 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 MIR1283-2-201ENST00000408621 87 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 RPS27P16-201ENST00000425758 201 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 RNU7-41P-201ENST00000515917 61 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 PRELID3BP2-201ENST00000605362 201 ntBASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
NKX2-3Q8TAU0 Y_RNA.239-201ENST00000364444 113 ntBASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 Y_RNA.338-201ENST00000365320 114 ntBASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 SNORD116-24-201ENST00000384549 92 ntBASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 MIR653-201ENST00000385279 96 ntBASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 RPL23AP42-201ENST00000471152 471 ntBASIC2.88□□□□□ -1.95
NKX2-3Q8TAU0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 MIR633-201ENST00000384821 98 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 MIR518A2-201ENST00000384966 87 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 MIR519A1-201ENST00000385257 85 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 AL359511.1-201ENST00000402970 211 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 AC097510.1-201ENST00000510945 133 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 MIR4658-201ENST00000584344 65 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 AC069503.3-201ENST00000618674 145 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 MIR7111-201ENST00000619751 72 ntBASIC2.87□□□□□ -1.95
NKX2-3Q8TAU0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.86□□□□□ -1.95
NKX2-3Q8TAU0 RNU6-1123P-201ENST00000362347 106 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms