Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
LDB3O75112 RNA5SP261-201ENST00000410536 106 ntBASIC1.19□□□□□ -2.22
LDB3O75112 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.19□□□□□ -2.22
LDB3O75112 RNU7-79P-201ENST00000516082 62 ntBASIC1.19□□□□□ -2.22
LDB3O75112 MIR3660-201ENST00000584845 100 ntBASIC1.19□□□□□ -2.22
LDB3O75112 snoU13.31-201ENST00000607291 104 ntBASIC1.19□□□□□ -2.22
LDB3O75112 Y_RNA.43-201ENST00000362670 111 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNY1P13-201ENST00000365030 105 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-409P-201ENST00000384114 104 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-205P-201ENST00000390858 107 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNY4P30-201ENST00000410216 95 ntBASIC1.18□□□□□ -2.22
LDB3O75112 MIR1912-201ENST00000410389 80 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-733P-201ENST00000410759 104 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-1086P-201ENST00000410930 100 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-893P-201ENST00000458841 100 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNU6-795P-201ENST00000516323 103 ntBASIC1.18□□□□□ -2.22
LDB3O75112 AC012531.4-201ENST00000616509 177 ntBASIC1.18□□□□□ -2.22
LDB3O75112 MIR6516-201ENST00000630554 81 ntBASIC1.18□□□□□ -2.22
LDB3O75112 RNY3P2-201ENST00000362918 102 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU6-832P-201ENST00000363319 107 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU6-1131P-201ENST00000364955 107 ntBASIC1.17□□□□□ -2.22
LDB3O75112 SNORD115-35-201ENST00000365122 82 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU6-1201P-201ENST00000384227 107 ntBASIC1.17□□□□□ -2.22
LDB3O75112 SNORD38B-201ENST00000384690 67 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNY1P7-201ENST00000384743 110 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU6-1321P-201ENST00000390905 107 ntBASIC1.17□□□□□ -2.22
LDB3O75112 MRPL35P3-201ENST00000421557 364 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU7-137P-201ENST00000516788 62 ntBASIC1.17□□□□□ -2.22
LDB3O75112 RNU6-1006P-201ENST00000516998 103 ntBASIC1.17□□□□□ -2.22
LDB3O75112 MIR4498-201ENST00000577599 66 ntBASIC1.17□□□□□ -2.22
LDB3O75112 FAM71BP1-201ENST00000604431 523 ntBASIC1.17□□□□□ -2.22
LDB3O75112 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.17□□□□□ -2.22
LDB3O75112 SNORD38B-202ENST00000625943 69 ntBASIC1.17□□□□□ -2.22
LDB3O75112 Y_RNA.78-201ENST00000362970 110 ntBASIC1.16□□□□□ -2.22
LDB3O75112 Y_RNA.363-201ENST00000365529 113 ntBASIC1.16□□□□□ -2.22
LDB3O75112 Y_RNA.507-201ENST00000384500 99 ntBASIC1.16□□□□□ -2.22
LDB3O75112 MIR34C-201ENST00000384831 77 ntBASIC1.16□□□□□ -2.22
LDB3O75112 MIR588-201ENST00000384900 83 ntBASIC1.16□□□□□ -2.22
LDB3O75112 SNORD77B-201ENST00000391112 67 ntBASIC1.16□□□□□ -2.22
LDB3O75112 AC096949.1-201ENST00000412047 152 ntBASIC1.16□□□□□ -2.22
LDB3O75112 snoU13.21-201ENST00000459368 105 ntBASIC1.16□□□□□ -2.22
LDB3O75112 RNU7-2P-201ENST00000516096 62 ntBASIC1.16□□□□□ -2.22
LDB3O75112 AC019288.1-201ENST00000557918 224 ntBASIC1.16□□□□□ -2.22
LDB3O75112 AC141846.1-201ENST00000568348 142 ntBASIC1.16□□□□□ -2.22
LDB3O75112 MIR4694-201ENST00000578534 80 ntBASIC1.16□□□□□ -2.22
LDB3O75112 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.16□□□□□ -2.22
LDB3O75112 AL662814.1-201ENST00000617364 121 ntBASIC1.16□□□□□ -2.22
LDB3O75112 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
LDB3O75112 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
LDB3O75112 RNA5SP264-201ENST00000363115 107 ntBASIC1.15□□□□□ -2.23
LDB3O75112 Y_RNA.448-201ENST00000384185 108 ntBASIC1.15□□□□□ -2.23
LDB3O75112 MTATP8P2-201ENST00000435212 202 ntBASIC1.15□□□□□ -2.23
LDB3O75112 snoU13.2-201ENST00000459201 104 ntBASIC1.15□□□□□ -2.23
LDB3O75112 AC048334.1-201ENST00000477975 159 ntBASIC1.15□□□□□ -2.23
LDB3O75112 RNU6-1053P-201ENST00000515930 101 ntBASIC1.15□□□□□ -2.23
LDB3O75112 DEFB131E-201ENST00000532329 154 ntBASIC1.15□□□□□ -2.23
LDB3O75112 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.15□□□□□ -2.23
LDB3O75112 SEPT14P17-201ENST00000617978 177 ntBASIC1.15□□□□□ -2.23
LDB3O75112 MIR30D-201ENST00000362283 70 ntBASIC1.14□□□□□ -2.23
LDB3O75112 RNU6-1313P-201ENST00000362622 102 ntBASIC1.14□□□□□ -2.23
LDB3O75112 Y_RNA.466-201ENST00000384294 113 ntBASIC1.14□□□□□ -2.23
LDB3O75112 Y_RNA.467-201ENST00000384297 102 ntBASIC1.14□□□□□ -2.23
LDB3O75112 MIR563-201ENST00000385080 79 ntBASIC1.14□□□□□ -2.23
LDB3O75112 RNU6-644P-201ENST00000391155 98 ntBASIC1.14□□□□□ -2.23
LDB3O75112 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.14□□□□□ -2.23
LDB3O75112 SNORA31.2-201ENST00000516019 134 ntBASIC1.14□□□□□ -2.23
LDB3O75112 MIR4777-201ENST00000583710 86 ntBASIC1.14□□□□□ -2.23
LDB3O75112 MIR376B-201ENST00000614515 100 ntBASIC1.14□□□□□ -2.23
LDB3O75112 MIR103A2-201ENST00000362154 78 ntBASIC1.13□□□□□ -2.23
LDB3O75112 RNU6-170P-201ENST00000362832 104 ntBASIC1.13□□□□□ -2.23
LDB3O75112 SNORA25.8-201ENST00000364831 128 ntBASIC1.13□□□□□ -2.23
LDB3O75112 Y_RNA.342-201ENST00000365352 113 ntBASIC1.13□□□□□ -2.23
LDB3O75112 Y_RNA.354-201ENST00000365448 111 ntBASIC1.13□□□□□ -2.23
LDB3O75112 RNU7-61P-201ENST00000515897 61 ntBASIC1.13□□□□□ -2.23
LDB3O75112 SCARNA23-201ENST00000516060 130 ntBASIC1.13□□□□□ -2.23
LDB3O75112 SNORA40.13-201ENST00000516379 120 ntBASIC1.13□□□□□ -2.23
LDB3O75112 RNU11-2P-201ENST00000516898 142 ntBASIC1.13□□□□□ -2.23
LDB3O75112 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.13□□□□□ -2.23
LDB3O75112 AC020891.4-201ENST00000605745 93 ntBASIC1.13□□□□□ -2.23
LDB3O75112 Y_RNA.818-201ENST00000618813 71 ntBASIC1.13□□□□□ -2.23
LDB3O75112 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.13□□□□□ -2.23
LDB3O75112 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
LDB3O75112 RNU6-396P-201ENST00000365369 105 ntBASIC1.12□□□□□ -2.23
LDB3O75112 RNU6-1113P-201ENST00000384348 107 ntBASIC1.12□□□□□ -2.23
LDB3O75112 Y_RNA.544-201ENST00000384650 113 ntBASIC1.12□□□□□ -2.23
LDB3O75112 U8.15-201ENST00000390947 134 ntBASIC1.12□□□□□ -2.23
LDB3O75112 SNORA75.2-201ENST00000391138 150 ntBASIC1.12□□□□□ -2.23
LDB3O75112 SNORA75.3-201ENST00000391231 150 ntBASIC1.12□□□□□ -2.23
LDB3O75112 AC015818.7-201ENST00000428754 109 ntBASIC1.12□□□□□ -2.23
LDB3O75112 AC087499.7-201ENST00000441958 109 ntBASIC1.12□□□□□ -2.23
LDB3O75112 RNU6-162P-201ENST00000516228 103 ntBASIC1.12□□□□□ -2.23
LDB3O75112 Y_RNA.694-201ENST00000516677 117 ntBASIC1.12□□□□□ -2.23
LDB3O75112 AL359821.1-201ENST00000605519 182 ntBASIC1.12□□□□□ -2.23
LDB3O75112 AL442128.1-201ENST00000615151 90 ntBASIC1.12□□□□□ -2.23
LDB3O75112 AL512310.12-203ENST00000640543 90 ntBASIC1.12□□□□□ -2.23
LDB3O75112 MIR337-201ENST00000362281 93 ntBASIC1.11□□□□□ -2.23
LDB3O75112 Y_RNA.107-201ENST00000363190 121 ntBASIC1.11□□□□□ -2.23
LDB3O75112 Y_RNA.290-201ENST00000364879 114 ntBASIC1.11□□□□□ -2.23
LDB3O75112 Y_RNA.327-201ENST00000365201 102 ntBASIC1.11□□□□□ -2.23
LDB3O75112 Y_RNA.377-201ENST00000365644 108 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms