Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 Y_RNA.191-201ENST00000363972 113 ntBASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 RNU6-439P-201ENST00000384188 106 ntBASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 Y_RNA.609-201ENST00000410669 89 ntBASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 MIR1273D-201ENST00000577266 86 ntBASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 MIR548BB-201ENST00000626714 66 ntBASIC2.18□□□□□ -2.06
AP4E1Q9UPM8 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 RNU6-633P-201ENST00000362612 103 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 SNORA16B-201ENST00000364674 135 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 RNA5SP259-201ENST00000365541 109 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 Y_RNA.426-201ENST00000384068 113 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 MIR1302-7-201ENST00000408841 72 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 RNA5SP425-201ENST00000410336 112 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 RNU6-613P-201ENST00000410412 108 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 RN7SKP223-201ENST00000410582 62 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 Y_RNA.611-201ENST00000410682 108 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 JTBP1-201ENST00000441314 247 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 SPINT5P-201ENST00000448174 155 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 AC012676.2-201ENST00000619258 186 ntBASIC2.17□□□□□ -2.06
AP4E1Q9UPM8 HSBP1P2-201ENST00000299671 229 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AL596028.1-201ENST00000326971 197 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 Y_RNA.313-201ENST00000365095 103 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 Y_RNA.437-201ENST00000384113 113 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 SNORD38.2-201ENST00000384470 69 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 RNA5SP237-201ENST00000410414 113 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AC244023.1-201ENST00000426884 112 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AC079804.2-201ENST00000490376 200 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 RNU6-250P-201ENST00000516958 103 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 MIR3192-201ENST00000584920 77 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AP000942.3-201ENST00000603702 160 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AC242498.1-201ENST00000604134 111 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 AL096861.1-201ENST00000610899 123 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 ZNF658B-202ENST00000615961 3375 ntBASIC2.16□□□□□ -2.06
AP4E1Q9UPM8 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
AP4E1Q9UPM8 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
AP4E1Q9UPM8 RNA5SP276-201ENST00000362580 94 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 RNU6-1125P-201ENST00000363601 107 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 RNA5SP138-201ENST00000365098 114 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 RNU6-949P-201ENST00000384040 107 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 SNORA2B-201ENST00000384583 137 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 SNORA64-201ENST00000384674 134 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 RNU1-98P-201ENST00000458992 160 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 RNU6-922P-201ENST00000516753 99 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 AL513043.2-201ENST00000573941 143 ntBASIC2.15□□□□□ -2.07
AP4E1Q9UPM8 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 SNORD115-27-201ENST00000364430 82 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 SNORA70B-201ENST00000384210 135 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 MIR563-201ENST00000385080 79 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 snoU13.2-201ENST00000459201 104 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 PRELID3BP2-201ENST00000605362 201 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 AP000553.5-201ENST00000641933 54 ntBASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
AP4E1Q9UPM8 Y_RNA.244-201ENST00000364484 109 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 RNA5SP160-201ENST00000364866 120 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 RNA5SP37-201ENST00000365420 130 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 SNORA67.3-201ENST00000384366 140 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 MIR181B2-201ENST00000385004 89 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 MIR1261-201ENST00000408659 82 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 AC025033.1-201ENST00000463883 194 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 RNU6-857P-201ENST00000515893 110 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 AC133485.1-201ENST00000567176 124 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 AC015688.6-201ENST00000577737 104 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 WWP1P1-201ENST00000466609 2769 ntBASIC2.13□□□□□ -2.07
AP4E1Q9UPM8 RNA5SP133-201ENST00000363368 119 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 RNY1P2-201ENST00000364820 117 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 Y_RNA.607-201ENST00000410597 98 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 AL161932.1-201ENST00000437408 146 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 AC027119.1-201ENST00000440877 241 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 MIR514B-201ENST00000516774 80 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 MTND5P40-201ENST00000559945 246 ntBASIC2.12□□□□□ -2.07
AP4E1Q9UPM8 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 snoU13.25-201ENST00000458945 104 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 AC090255.1-201ENST00000495779 349 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 RNU1-40P-201ENST00000516816 164 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 RNU1-97P-201ENST00000516872 164 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 AL357312.1-201ENST00000603879 298 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 Y_RNA.783-201ENST00000613546 102 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 MIR6740-201ENST00000618268 113 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 MIR219B-201ENST00000637023 88 ntBASIC2.11□□□□□ -2.07
AP4E1Q9UPM8 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 RNA5SP212-201ENST00000391223 107 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 HMGN2P38-201ENST00000423806 265 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 SNRPGP12-201ENST00000449481 213 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 RPS29P11-201ENST00000496507 171 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 AC138749.4-201ENST00000563970 127 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 SNORA77B-201ENST00000578179 125 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 AC131280.1-202ENST00000624067 4211 ntBASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
AP4E1Q9UPM8 U8.2-201ENST00000363156 134 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms