Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-44P-201ENST00000384045 107 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.549-201ENST00000384657 102 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 MIR320A-201ENST00000385302 82 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 MRPL35P3-201ENST00000421557 364 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 AC023790.1-201ENST00000482174 347 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 SNORA31.2-201ENST00000516019 134 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 RNU4-67P-201ENST00000364569 141 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 SNORA32-201ENST00000384072 121 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU6-409P-201ENST00000384114 104 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU6-342P-201ENST00000384521 104 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU6-816P-201ENST00000390914 107 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU6-1268P-201ENST00000391214 107 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU6-1239P-201ENST00000391310 107 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 RNU7-62P-201ENST00000458856 62 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 AC048334.1-201ENST00000477975 159 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.36□□□□□ -2.19
VSX1Q9NZR4 AL035470.1-201ENST00000622571 220 ntBASIC1.36□□□□□ -2.19
VSX1Q9NZR4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
VSX1Q9NZR4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
VSX1Q9NZR4 RNU1-17P-201ENST00000363022 152 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 SNORD113.3-201ENST00000364630 78 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 U8.6-201ENST00000364939 135 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 SNORD115-35-201ENST00000365122 82 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 RNA5SP190-201ENST00000365222 118 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 RNU6-949P-201ENST00000384040 107 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 SNORA17.3-201ENST00000391159 129 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 MIR1323-201ENST00000408090 73 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 SNORD111-201ENST00000408139 94 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 RPL39P25-201ENST00000449384 154 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 AC141846.1-201ENST00000568348 142 ntBASIC1.35□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.10-201ENST00000362371 110 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 MIR517C-201ENST00000385103 95 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 MIR1304-201ENST00000408243 91 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 RNU6-1165P-201ENST00000410119 107 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 RNU6-733P-201ENST00000410759 104 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 AL031737.1-201ENST00000450125 223 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 SNORA70.22-201ENST00000517160 124 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.34□□□□□ -2.19
VSX1Q9NZR4 SNORA4-201ENST00000584302 138 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 MIR7843-201ENST00000622274 79 ntBASIC1.34□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.116-201ENST00000363292 103 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.155-201ENST00000363632 101 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.163-201ENST00000363702 113 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 RNA5SP99-201ENST00000364020 114 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 RNY1P13-201ENST00000365030 105 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 RNU6-616P-201ENST00000384353 107 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 RNU7-90P-201ENST00000459216 62 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 RNU7-2P-201ENST00000516096 62 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.33□□□□□ -2.2
VSX1Q9NZR4 AL645939.4-201ENST00000604495 135 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 AC012676.2-201ENST00000619258 186 ntBASIC1.33□□□□□ -2.2
VSX1Q9NZR4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.98-201ENST00000363109 102 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 RNU6-106P-201ENST00000384405 107 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 RNU6-1237P-201ENST00000384777 107 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 MIR150-201ENST00000385048 84 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 RNU7-21P-201ENST00000459430 62 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 AC015712.3-201ENST00000559380 164 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 MIR4303-201ENST00000581299 66 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.773-201ENST00000607168 90 ntBASIC1.32□□□□□ -2.2
VSX1Q9NZR4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
VSX1Q9NZR4 RNU4-36P-201ENST00000364294 144 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 SNORD79.1-201ENST00000516069 84 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 RNU7-137P-201ENST00000516788 62 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 SNORD53B-201ENST00000577887 78 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 MIR4694-201ENST00000578534 80 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 AC106800.4-201ENST00000614905 153 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 MIR6740-201ENST00000618268 113 ntBASIC1.31□□□□□ -2.2
VSX1Q9NZR4 MIR30D-201ENST00000362283 70 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU6-766P-201ENST00000362478 107 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU1-42P-201ENST00000364033 160 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.377-201ENST00000365644 108 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 SNORD26-201ENST00000384147 75 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU6-910P-201ENST00000390844 107 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU6-205P-201ENST00000390858 107 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 MIR1270-201ENST00000459320 83 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 SNORD67.1-201ENST00000516618 108 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU6-521P-201ENST00000516663 105 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNU6-548P-201ENST00000517083 115 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 SNORA31.24-201ENST00000517232 57 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 AC133485.1-201ENST00000567176 124 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 AC096720.1-201ENST00000604441 183 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 MIR7974-201ENST00000615835 79 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 MIR6715A-201ENST00000615929 79 ntBASIC1.3□□□□□ -2.2
VSX1Q9NZR4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
VSX1Q9NZR4 RNY3P2-201ENST00000362918 102 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 RNU6-153P-201ENST00000364422 104 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 RNU6-60P-201ENST00000364792 103 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 SNORD38.2-201ENST00000384470 69 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 SNORA2B-201ENST00000384583 137 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 MIR206-201ENST00000384872 86 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 SNORA67.6-201ENST00000391093 99 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 AC036111.3-201ENST00000526389 112 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 MIR1255B1-201ENST00000636325 63 ntBASIC1.29□□□□□ -2.2
VSX1Q9NZR4 AL391516.1-201ENST00000554380 2449 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 RNU6-1313P-201ENST00000362622 102 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 RNU6-654P-201ENST00000364373 107 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 268.9 ms