Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR563-201ENST00000385080 79 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 AC108667.1-201ENST00000428618 249 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 MIR18B-201ENST00000454574 71 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 SNORA4-201ENST00000584302 138 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 AC106800.4-201ENST00000614905 153 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 AL589743.1-201ENST00000551932 2712 ntBASIC1.5□□□□□ -2.17
TRIM39Q9HCM9 AC008163.1-202ENST00000636004 2889 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 RNA5SP327-201ENST00000362494 101 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 SNORD115-19-201ENST00000363098 82 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 SNORD115-18-201ENST00000363293 82 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 SNORD115-17-201ENST00000364612 82 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 MT-TI-201ENST00000387365 69 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 MIR1323-201ENST00000408090 73 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 MIR1304-201ENST00000408243 91 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 AC063976.4-201ENST00000421971 163 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 AC036111.3-201ENST00000526389 112 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 AL645939.4-201ENST00000604495 135 ntBASIC1.49□□□□□ -2.17
TRIM39Q9HCM9 RNU6-994P-201ENST00000410507 111 ntBASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 AL603825.1-201ENST00000438481 80 ntBASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 AC023790.1-201ENST00000482174 347 ntBASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 SNORA31.24-201ENST00000517232 57 ntBASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 AC023827.1-201ENST00000569247 97 ntBASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.48□□□□□ -2.17
TRIM39Q9HCM9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 SNORA25.8-201ENST00000364831 128 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 Y_RNA.362-201ENST00000365518 110 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 Y_RNA.507-201ENST00000384500 99 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 RNU4-62P-201ENST00000410125 130 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 AC067940.1-201ENST00000458411 300 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 RPL39P34-201ENST00000477141 156 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 AC087741.2-201ENST00000619415 172 ntBASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
TRIM39Q9HCM9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.49-201ENST00000362714 112 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.309-201ENST00000365046 111 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 RNU6-949P-201ENST00000384040 107 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 AC019288.1-201ENST00000557918 224 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 AL512598.1-201ENST00000610158 273 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 MIR6129-201ENST00000616087 109 ntBASIC1.46□□□□□ -2.18
TRIM39Q9HCM9 SNORD114-10-201ENST00000363409 72 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNY1P13-201ENST00000365030 105 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 MIR320A-201ENST00000385302 82 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-447P-201ENST00000410293 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-1118P-201ENST00000410382 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 MIR1912-201ENST00000410389 80 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-1076P-201ENST00000410397 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-355P-201ENST00000410427 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-791P-201ENST00000410467 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-705P-201ENST00000410601 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-1100P-201ENST00000410691 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-860P-201ENST00000410860 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-1217P-201ENST00000411276 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 RNU6-785P-201ENST00000411324 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 AL354695.1-201ENST00000427935 228 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 U6.90-201ENST00000614007 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 U6.70-201ENST00000620287 104 ntBASIC1.45□□□□□ -2.18
TRIM39Q9HCM9 MIR30D-201ENST00000362283 70 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.35-201ENST00000362601 101 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 RNU6-1325P-201ENST00000364905 105 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 RNU6-934P-201ENST00000365154 107 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 RNU6-616P-201ENST00000384353 107 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 AC002429.1-201ENST00000437672 148 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 AC027335.2-201ENST00000624030 375 ntBASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
TRIM39Q9HCM9 SNORA63.5-201ENST00000363548 123 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.281-201ENST00000364774 94 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.344-201ENST00000365381 112 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 BTF3P4-201ENST00000418852 495 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 SNORD67.1-201ENST00000516618 108 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 AC133485.1-201ENST00000567176 124 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 AL162726.3-218ENST00000636401 95 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 ZNF209P-201ENST00000593450 2304 ntBASIC1.43□□□□□ -2.18
TRIM39Q9HCM9 MIR378A-201ENST00000362177 66 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 MIR26B-201ENST00000362251 77 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 MIR1257-201ENST00000408490 117 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 AP1B1P2-201ENST00000416196 106 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 RNU7-40P-201ENST00000516397 64 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 RNU7-137P-201ENST00000516788 62 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.42□□□□□ -2.18
TRIM39Q9HCM9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.85-201ENST00000363014 111 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 Y_RNA.338-201ENST00000365320 114 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 RNU7-95P-201ENST00000459222 64 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 MIR1270-201ENST00000459320 83 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 RNU7-2P-201ENST00000516096 62 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 MIR4781-201ENST00000585250 76 ntBASIC1.41□□□□□ -2.18
TRIM39Q9HCM9 AC023934.1-201ENST00000574529 2389 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.155-201ENST00000363632 101 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU4-67P-201ENST00000364569 141 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-429P-201ENST00000384582 108 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 353.7 ms