Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.298-201ENST00000364960 107 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.366-201ENST00000365540 102 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 MIR539-201ENST00000365690 78 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 MIR613-201ENST00000385248 95 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 MIR548M-201ENST00000408260 86 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-1086P-201ENST00000410930 100 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 RPS26P5-201ENST00000418544 335 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 RNA5SP33-201ENST00000516687 98 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 MIR3133-201ENST00000583157 78 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 MIR6734-201ENST00000621166 68 ntBASIC1.37□□□□□ -2.19
CCDC144BQ3MJ40 SNORA18-201ENST00000384416 132 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-1237P-201ENST00000384777 107 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 MIR1827-201ENST00000408549 66 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 MTND4LP9-201ENST00000427694 174 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 PDCD5P2-201ENST00000507570 312 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 UBL5P1-201ENST00000507979 193 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 RNU2-35P-201ENST00000516446 142 ntBASIC1.36□□□□□ -2.19
CCDC144BQ3MJ40 MIR30D-201ENST00000362283 70 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 MIR520E-201ENST00000384867 87 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 MIR100-201ENST00000385259 80 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 AL512326.2-201ENST00000426359 151 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 AL158147.1-201ENST00000443970 75 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-1258P-201ENST00000516911 111 ntBASIC1.35□□□□□ -2.19
CCDC144BQ3MJ40 SNORD83.1-201ENST00000411362 77 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 RNU7-123P-201ENST00000515911 60 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 RNA5SP272-201ENST00000516095 111 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 AC141846.1-201ENST00000568348 142 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 MIR4771-2-201ENST00000577758 74 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 MIR4771-1-201ENST00000582617 74 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 AC108081.1-201ENST00000604358 221 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 MIR6767-201ENST00000637302 66 ntBASIC1.34□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.466-201ENST00000384294 113 ntBASIC1.33□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-257P-201ENST00000410238 98 ntBASIC1.33□□□□□ -2.2
CCDC144BQ3MJ40 RNA5SP136-201ENST00000410906 107 ntBASIC1.33□□□□□ -2.2
CCDC144BQ3MJ40 RNA5SP255-201ENST00000516370 107 ntBASIC1.33□□□□□ -2.2
CCDC144BQ3MJ40 Y_RNA.280-201ENST00000364765 112 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 SNORD89-201ENST00000390981 114 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 MIR1257-201ENST00000408490 117 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 MIR1285-1-201ENST00000408593 84 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 RPS29P1-201ENST00000465274 159 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 RN7SKP19-201ENST00000516016 252 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 RN7SKP179-201ENST00000516126 217 ntBASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC144BQ3MJ40 MIR759-201ENST00000390224 91 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 snoU13.21-201ENST00000459368 105 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 OR2A41P-201ENST00000473586 105 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-977P-201ENST00000516411 103 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 MIR4295-201ENST00000585286 85 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 AC023934.1-201ENST00000574529 2389 ntBASIC1.31□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-949P-201ENST00000384040 107 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 Y_RNA.470-201ENST00000384307 117 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-342P-201ENST00000384521 104 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNU4-69P-201ENST00000410677 143 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 AC087343.1-201ENST00000477341 475 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNU7-79P-201ENST00000516082 62 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNY4P20-201ENST00000516678 93 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 RNU7-35P-201ENST00000517174 62 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 AC022709.1-201ENST00000615967 87 ntBASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC144BQ3MJ40 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-774P-201ENST00000363238 107 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 RNU6-704P-201ENST00000364162 103 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 Y_RNA.586-201ENST00000391146 98 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 RNU7-185P-201ENST00000459215 60 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 MIR4676-201ENST00000583078 72 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 uc_338.6-201ENST00000613544 171 ntBASIC1.29□□□□□ -2.2
CCDC144BQ3MJ40 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC144BQ3MJ40 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CCDC144BQ3MJ40 SNORD77B-201ENST00000391112 67 ntBASIC1.28□□□□□ -2.2
CCDC144BQ3MJ40 Y_RNA.294-201ENST00000364916 102 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 MIR125B2-201ENST00000385128 89 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 MIR938-201ENST00000401216 83 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 SNORD93-201ENST00000408813 74 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 Y_RNA.617-201ENST00000410920 90 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 MIR548AE2-201ENST00000583456 67 ntBASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.27□□□□□ -2.21
CCDC144BQ3MJ40 Y_RNA.540-201ENST00000384638 111 ntBASIC1.26□□□□□ -2.21
CCDC144BQ3MJ40 SNORD105-201ENST00000386910 85 ntBASIC1.26□□□□□ -2.21
CCDC144BQ3MJ40 Y_RNA.213-201ENST00000364178 111 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 RNY1P13-201ENST00000365030 105 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-364P-201ENST00000384387 107 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 MIR548J-201ENST00000408833 112 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-1211P-201ENST00000459179 105 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 MIR4804-201ENST00000581683 73 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 AC020891.4-201ENST00000605745 93 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 MIR6788-201ENST00000618842 66 ntBASIC1.25□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-369P-201ENST00000362515 102 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 RNU1-36P-201ENST00000365130 165 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 SNORA32-201ENST00000384072 121 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 MIR520F-201ENST00000384824 87 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-447P-201ENST00000410293 104 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-1118P-201ENST00000410382 104 ntBASIC1.24□□□□□ -2.21
CCDC144BQ3MJ40 RNU6-1076P-201ENST00000410397 104 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms