Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU7-70P-201ENST00000516941 66 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 AL365205.2-201ENST00000594586 68 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 RNU1-29P-201ENST00000606574 126 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 AL442067.1-201ENST00000613261 223 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 MTND4P29-201ENST00000503122 1372 ntBASIC-0.16□□□□□ -2.43
FOXA1P55317 SNORA63.5-201ENST00000363548 123 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 RNU4-16P-201ENST00000364737 141 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 SNORA22B-201ENST00000383876 138 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 MIR892B-201ENST00000401279 77 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 SNORA79-201ENST00000408376 140 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 HAR1A.1-201ENST00000459583 118 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 RNU6-531P-201ENST00000516694 104 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 DEFB131E-201ENST00000532329 154 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 MIR4801-201ENST00000582704 82 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 AL360085.1-201ENST00000604713 532 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 MIR6086-201ENST00000638065 55 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 MTND5P32-201ENST00000560711 1802 ntBASIC-0.16□□□□□ -2.44
FOXA1P55317 Y_RNA.158-201ENST00000363651 101 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 MIR214-201ENST00000385214 110 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 AC022028.1-201ENST00000412054 408 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 AC113618.1-201ENST00000416747 285 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 RNU6-782P-201ENST00000516852 104 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 IGLVI-20-201ENST00000519296 130 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 AP003072.1-201ENST00000531740 145 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 MIR4743-201ENST00000584576 69 ntBASIC-0.17□□□□□ -2.44
FOXA1P55317 Y_RNA.82-201ENST00000363000 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.92-201ENST00000363043 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.153-201ENST00000363615 91 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.235-201ENST00000364412 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-923P-201ENST00000364753 107 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.306-201ENST00000365015 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.312-201ENST00000365089 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.322-201ENST00000365151 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-302P-201ENST00000365249 107 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-728P-201ENST00000365375 104 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-929P-201ENST00000384429 107 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.509-201ENST00000384506 99 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-381P-201ENST00000391259 108 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.650-201ENST00000459002 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU7-79P-201ENST00000516082 62 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.777-201ENST00000516982 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 RNU6-570P-201ENST00000517051 105 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 AC138869.1-201ENST00000568623 124 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.771-201ENST00000598668 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 AL365265.1-201ENST00000621045 234 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.789-201ENST00000622480 102 ntBASIC-0.18□□□□□ -2.44
FOXA1P55317 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 RNU4-58P-201ENST00000363192 141 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 SNORD114-31-201ENST00000363219 75 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 RNA5SP133-201ENST00000363368 119 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 Y_RNA.128-201ENST00000363391 112 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 RNU6-652P-201ENST00000365488 107 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.19□□□□□ -2.44
FOXA1P55317 RNU6-893P-201ENST00000458841 100 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 SCARNA15-202ENST00000516881 127 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 Y_RNA.711-201ENST00000516993 102 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 AL442663.2-201ENST00000554385 511 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 MIR4680-201ENST00000580906 66 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 AL160413.1-201ENST00000622780 310 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 MIR1295B-201ENST00000636144 60 ntBASIC-0.19□□□□□ -2.44
FOXA1P55317 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.2□□□□□ -2.44
FOXA1P55317 SNORD115-24-201ENST00000363528 82 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 RNU6-726P-201ENST00000364680 107 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 RNU6-756P-201ENST00000383997 107 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 MIR501-201ENST00000390204 84 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 MIR1265-201ENST00000408444 86 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 Y_RNA.590-201ENST00000410140 107 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 RNU4-43P-201ENST00000410628 137 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 AL022718.1-201ENST00000412004 84 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 AC108059.2-201ENST00000434626 151 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 RNU7-159P-201ENST00000459284 62 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 RNU7-35P-201ENST00000517174 62 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 U2.14-201ENST00000615943 113 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 U6.109-201ENST00000636749 87 ntBASIC-0.2□□□□□ -2.44
FOXA1P55317 MIR101-2-201ENST00000362195 79 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 Y_RNA.216-201ENST00000364205 93 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 RNU6-702P-201ENST00000364982 107 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 RNU4-17P-201ENST00000365598 141 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 MIR548L-201ENST00000408303 86 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 AC104692.1-201ENST00000472406 90 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 SNORD116-25-201ENST00000516517 92 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 AC134503.1-201ENST00000633048 54 ntBASIC-0.21□□□□□ -2.44
FOXA1P55317 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.22□□□□□ -2.44
FOXA1P55317 Y_RNA.138-201ENST00000363462 102 ntBASIC-0.22□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms