Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR4422-201ENST00000581938 83 ntBASIC1.97□□□□□ -2.09
LIG3P49916 MIR7843-201ENST00000622274 79 ntBASIC1.97□□□□□ -2.09
LIG3P49916 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.97□□□□□ -2.09
LIG3P49916 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LIG3P49916 Y_RNA.93-201ENST00000363066 109 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-1201P-201ENST00000384227 107 ntBASIC1.96□□□□□ -2.1
LIG3P49916 MIR588-201ENST00000384900 83 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNY4P30-201ENST00000410216 95 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-447P-201ENST00000410293 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-1118P-201ENST00000410382 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-1076P-201ENST00000410397 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-355P-201ENST00000410427 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-791P-201ENST00000410467 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-705P-201ENST00000410601 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-1100P-201ENST00000410691 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-860P-201ENST00000410860 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-1217P-201ENST00000411276 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 RNU6-785P-201ENST00000411324 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 U6.90-201ENST00000614007 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 U6.70-201ENST00000620287 104 ntBASIC1.96□□□□□ -2.1
LIG3P49916 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
LIG3P49916 RNU6-865P-201ENST00000364772 107 ntBASIC1.95□□□□□ -2.1
LIG3P49916 RNY1P13-201ENST00000365030 105 ntBASIC1.95□□□□□ -2.1
LIG3P49916 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
LIG3P49916 RNU1-78P-201ENST00000391248 165 ntBASIC1.95□□□□□ -2.1
LIG3P49916 MIR1185-1-201ENST00000408598 86 ntBASIC1.95□□□□□ -2.1
LIG3P49916 AC245517.4-201ENST00000448601 281 ntBASIC1.95□□□□□ -2.1
LIG3P49916 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.95□□□□□ -2.1
LIG3P49916 AC096720.1-201ENST00000604441 183 ntBASIC1.95□□□□□ -2.1
LIG3P49916 AL442128.1-201ENST00000615151 90 ntBASIC1.95□□□□□ -2.1
LIG3P49916 RNA5SP432-201ENST00000362480 116 ntBASIC1.94□□□□□ -2.1
LIG3P49916 RNA5SP363-201ENST00000365072 115 ntBASIC1.94□□□□□ -2.1
LIG3P49916 Y_RNA.448-201ENST00000384185 108 ntBASIC1.94□□□□□ -2.1
LIG3P49916 AC108729.3-201ENST00000513484 108 ntBASIC1.94□□□□□ -2.1
LIG3P49916 RNU6-165P-201ENST00000517170 99 ntBASIC1.94□□□□□ -2.1
LIG3P49916 MIR6516-201ENST00000630554 81 ntBASIC1.94□□□□□ -2.1
LIG3P49916 AL161722.3-201ENST00000605789 2983 ntBASIC1.93□□□□□ -2.1
LIG3P49916 SNORD45B-201ENST00000364617 72 ntBASIC1.93□□□□□ -2.1
LIG3P49916 U8.13-201ENST00000390842 128 ntBASIC1.93□□□□□ -2.1
LIG3P49916 RNU6-205P-201ENST00000390858 107 ntBASIC1.93□□□□□ -2.1
LIG3P49916 RNU6-613P-201ENST00000410412 108 ntBASIC1.93□□□□□ -2.1
LIG3P49916 MTATP8P2-201ENST00000435212 202 ntBASIC1.93□□□□□ -2.1
LIG3P49916 RNU7-62P-201ENST00000458856 62 ntBASIC1.93□□□□□ -2.1
LIG3P49916 AC024614.2-201ENST00000577584 372 ntBASIC1.93□□□□□ -2.1
LIG3P49916 MIR5582-201ENST00000579697 68 ntBASIC1.93□□□□□ -2.1
LIG3P49916 MIR4524B-201ENST00000581569 115 ntBASIC1.93□□□□□ -2.1
LIG3P49916 MIR6740-201ENST00000618268 113 ntBASIC1.93□□□□□ -2.1
LIG3P49916 MIR377-201ENST00000362145 69 ntBASIC1.92□□□□□ -2.1
LIG3P49916 RNU6-949P-201ENST00000384040 107 ntBASIC1.92□□□□□ -2.1
LIG3P49916 MIR563-201ENST00000385080 79 ntBASIC1.92□□□□□ -2.1
LIG3P49916 MIR934-201ENST00000401241 83 ntBASIC1.92□□□□□ -2.1
LIG3P49916 AL445685.2-201ENST00000422551 342 ntBASIC1.92□□□□□ -2.1
LIG3P49916 RNU6-237P-201ENST00000515985 71 ntBASIC1.92□□□□□ -2.1
LIG3P49916 AC105081.1-201ENST00000617727 106 ntBASIC1.92□□□□□ -2.1
LIG3P49916 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.92□□□□□ -2.1
LIG3P49916 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LIG3P49916 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LIG3P49916 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LIG3P49916 MIR583-201ENST00000384846 75 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RNU6-1321P-201ENST00000390905 107 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RNU6-1307P-201ENST00000391012 103 ntBASIC1.91□□□□□ -2.1
LIG3P49916 SNORA40.18-201ENST00000391200 128 ntBASIC1.91□□□□□ -2.1
LIG3P49916 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.91□□□□□ -2.1
LIG3P49916 RPS27P16-201ENST00000425758 201 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RNU7-48P-201ENST00000458875 63 ntBASIC1.91□□□□□ -2.1
LIG3P49916 Y_RNA.659-201ENST00000515994 113 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RNA5SP182-201ENST00000516064 82 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RN7SKP88-201ENST00000516847 250 ntBASIC1.91□□□□□ -2.1
LIG3P49916 RNU6-295P-201ENST00000516901 104 ntBASIC1.91□□□□□ -2.1
LIG3P49916 AC006254.2-201ENST00000603259 279 ntBASIC1.91□□□□□ -2.1
LIG3P49916 7SK.8-201ENST00000612110 250 ntBASIC1.91□□□□□ -2.1
LIG3P49916 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.91□□□□□ -2.1
LIG3P49916 7SK.11-201ENST00000615477 250 ntBASIC1.91□□□□□ -2.1
LIG3P49916 7SK.13-201ENST00000622040 250 ntBASIC1.91□□□□□ -2.1
LIG3P49916 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.91□□□□□ -2.1
LIG3P49916 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
LIG3P49916 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.1
LIG3P49916 Y_RNA.369-201ENST00000365568 117 ntBASIC1.9□□□□□ -2.11
LIG3P49916 Y_RNA.466-201ENST00000384294 113 ntBASIC1.9□□□□□ -2.11
LIG3P49916 RNU6-1165P-201ENST00000410119 107 ntBASIC1.9□□□□□ -2.11
LIG3P49916 RPS29P28-201ENST00000446439 141 ntBASIC1.9□□□□□ -2.11
LIG3P49916 AC133485.1-201ENST00000567176 124 ntBASIC1.9□□□□□ -2.11
LIG3P49916 SNORA4-201ENST00000584302 138 ntBASIC1.9□□□□□ -2.11
LIG3P49916 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.9□□□□□ -2.11
LIG3P49916 RNU6-170P-201ENST00000362832 104 ntBASIC1.89□□□□□ -2.11
LIG3P49916 Y_RNA.98-201ENST00000363109 102 ntBASIC1.89□□□□□ -2.11
LIG3P49916 MIR34C-201ENST00000384831 77 ntBASIC1.89□□□□□ -2.11
LIG3P49916 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.89□□□□□ -2.11
LIG3P49916 AC096949.1-201ENST00000412047 152 ntBASIC1.89□□□□□ -2.11
LIG3P49916 AC004941.2-201ENST00000427009 228 ntBASIC1.89□□□□□ -2.11
LIG3P49916 AL591806.2-201ENST00000433122 173 ntBASIC1.89□□□□□ -2.11
LIG3P49916 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.89□□□□□ -2.11
LIG3P49916 MIR6845-201ENST00000613182 61 ntBASIC1.89□□□□□ -2.11
LIG3P49916 MIR376B-201ENST00000614515 100 ntBASIC1.89□□□□□ -2.11
LIG3P49916 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIG3P49916 Y_RNA.96-201ENST00000363092 109 ntBASIC1.88□□□□□ -2.11
LIG3P49916 SNORD38.1-201ENST00000363863 68 ntBASIC1.88□□□□□ -2.11
LIG3P49916 RNU6-654P-201ENST00000364373 107 ntBASIC1.88□□□□□ -2.11
LIG3P49916 MT-TF-201ENST00000387314 71 ntBASIC1.88□□□□□ -2.11
LIG3P49916 RNU6-1054P-201ENST00000411293 104 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 199.2 ms