Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 U6.70-201ENST00000620287 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 MIR6873-201ENST00000622788 63 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-865P-201ENST00000364772 107 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 MIR548G-201ENST00000408442 89 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 RNU7-193P-201ENST00000516723 65 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 MIR4529-201ENST00000578110 78 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 MIR4251-201ENST00000635819 61 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 AC006160.2-201ENST00000637708 154 ntBASIC1.95□□□□□ -2.1
LIMS1P48059 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
LIMS1P48059 SNORD114-1-201ENST00000362705 72 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 RNU6-509P-201ENST00000363519 107 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 Y_RNA.173-201ENST00000363776 113 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 SNORA16B-201ENST00000364674 135 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 RNY1P13-201ENST00000365030 105 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 RNY1P4-201ENST00000384595 115 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 AC019129.1-201ENST00000403786 261 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 AC004965.1-201ENST00000413033 213 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.94□□□□□ -2.1
LIMS1P48059 AL591806.2-201ENST00000433122 173 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 RPL23AP42-201ENST00000471152 471 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.94□□□□□ -2.1
LIMS1P48059 RNU7-41P-201ENST00000515917 61 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 MIR6132-201ENST00000622083 109 ntBASIC1.94□□□□□ -2.1
LIMS1P48059 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
LIMS1P48059 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
LIMS1P48059 RNU6-633P-201ENST00000362612 103 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 Y_RNA.426-201ENST00000384068 113 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 Y_RNA.567-201ENST00000384736 106 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 RNU7-48P-201ENST00000458875 63 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 RNU1-40P-201ENST00000516816 164 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 RNU1-97P-201ENST00000516872 164 ntBASIC1.93□□□□□ -2.1
LIMS1P48059 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
LIMS1P48059 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
LIMS1P48059 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
LIMS1P48059 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
LIMS1P48059 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LIMS1P48059 SNORD38B-201ENST00000384690 67 ntBASIC1.92□□□□□ -2.1
LIMS1P48059 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
LIMS1P48059 RPL31P63-201ENST00000422565 375 ntBASIC1.92□□□□□ -2.1
LIMS1P48059 MIR3935-201ENST00000583472 104 ntBASIC1.92□□□□□ -2.1
LIMS1P48059 RNU6-90P-201ENST00000606352 106 ntBASIC1.92□□□□□ -2.1
LIMS1P48059 SNORD38B-202ENST00000625943 69 ntBASIC1.92□□□□□ -2.1
LIMS1P48059 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
LIMS1P48059 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIMS1P48059 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
LIMS1P48059 Y_RNA.4-201ENST00000362333 112 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 Y_RNA.98-201ENST00000363109 102 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 RNA5SP48-201ENST00000363969 126 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 SNORD41-201ENST00000386967 70 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 MIR676-201ENST00000390702 67 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 RNU6-613P-201ENST00000410412 108 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 AC009474.2-201ENST00000451383 136 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 RNA5SP233-201ENST00000459153 113 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 RNU6-322P-201ENST00000516010 103 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 RNU2-19P-201ENST00000517288 84 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMS1P48059 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMS1P48059 MIR4448-201ENST00000584360 86 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 AC105081.1-201ENST00000617727 106 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 AP001362.1-201ENST00000625165 124 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 MIR548BB-201ENST00000626714 66 ntBASIC1.91□□□□□ -2.1
LIMS1P48059 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LIMS1P48059 HSBP1P2-201ENST00000299671 229 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 Y_RNA.313-201ENST00000365095 103 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 SNORD38.2-201ENST00000384470 69 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 SNORD111.1-201ENST00000516421 86 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 RNU6-548P-201ENST00000517083 115 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 AC141846.1-201ENST00000568348 142 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 AC020891.4-201ENST00000605745 93 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LIMS1P48059 AL662814.1-201ENST00000617364 121 ntBASIC1.9□□□□□ -2.11
LIMS1P48059 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
LIMS1P48059 Y_RNA.244-201ENST00000364484 109 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 Y_RNA.437-201ENST00000384113 113 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 MIR1289-2-201ENST00000408360 111 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 Y_RNA.609-201ENST00000410669 89 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 Y_RNA.611-201ENST00000410682 108 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.89□□□□□ -2.11
LIMS1P48059 RNU6-857P-201ENST00000515893 110 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 MIR4287-201ENST00000579398 78 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 AC012676.2-201ENST00000619258 186 ntBASIC1.89□□□□□ -2.11
LIMS1P48059 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
LIMS1P48059 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
LIMS1P48059 Y_RNA.191-201ENST00000363972 113 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 Y_RNA.607-201ENST00000410597 98 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 AC244023.1-201ENST00000426884 112 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 AL161932.1-201ENST00000437408 146 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 JTBP1-201ENST00000441314 247 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 RNU1-98P-201ENST00000458992 160 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 AC055731.1-201ENST00000474387 401 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 RNA5SP458-201ENST00000516188 119 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 RNU6-250P-201ENST00000516958 103 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 AC242498.1-201ENST00000604134 111 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 AL353997.5-201ENST00000618886 171 ntBASIC1.88□□□□□ -2.11
LIMS1P48059 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIMS1P48059 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.87□□□□□ -2.11
LIMS1P48059 WWP1P1-201ENST00000466609 2769 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
LIMS1P48059 RNA5SP133-201ENST00000363368 119 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms