Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SNORA70B-201ENST00000384210 135 ntBASIC2.44□□□□□ -2.02
MSX1P28360 MIR563-201ENST00000385080 79 ntBASIC2.44□□□□□ -2.02
MSX1P28360 RNU6-557P-201ENST00000516842 110 ntBASIC2.44□□□□□ -2.02
MSX1P28360 SNORA31.25-201ENST00000517242 134 ntBASIC2.44□□□□□ -2.02
MSX1P28360 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.44□□□□□ -2.02
MSX1P28360 U6.109-201ENST00000636749 87 ntBASIC2.44□□□□□ -2.02
MSX1P28360 SNORA67.1-201ENST00000364749 141 ntBASIC2.43□□□□□ -2.02
MSX1P28360 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
MSX1P28360 MIR4529-201ENST00000578110 78 ntBASIC2.43□□□□□ -2.02
MSX1P28360 SNORA4-201ENST00000584302 138 ntBASIC2.43□□□□□ -2.02
MSX1P28360 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
MSX1P28360 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
MSX1P28360 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
MSX1P28360 Y_RNA.119-201ENST00000363301 96 ntBASIC2.42□□□□□ -2.02
MSX1P28360 AL161935.2-201ENST00000414627 60 ntBASIC2.42□□□□□ -2.02
MSX1P28360 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.42□□□□□ -2.02
MSX1P28360 RNA5SP282-201ENST00000516355 108 ntBASIC2.42□□□□□ -2.02
MSX1P28360 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.42□□□□□ -2.02
MSX1P28360 MIR4796-201ENST00000580742 81 ntBASIC2.42□□□□□ -2.02
MSX1P28360 MIR4635-201ENST00000583759 79 ntBASIC2.42□□□□□ -2.02
MSX1P28360 MIR6817-201ENST00000615588 66 ntBASIC2.42□□□□□ -2.02
MSX1P28360 MIR7843-201ENST00000622274 79 ntBASIC2.42□□□□□ -2.02
MSX1P28360 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
MSX1P28360 SNORA63.2-201ENST00000362603 126 ntBASIC2.41□□□□□ -2.02
MSX1P28360 RNA5SP68-201ENST00000363885 119 ntBASIC2.41□□□□□ -2.02
MSX1P28360 RNU6-396P-201ENST00000365369 105 ntBASIC2.41□□□□□ -2.02
MSX1P28360 RNA5SP259-201ENST00000365541 109 ntBASIC2.41□□□□□ -2.02
MSX1P28360 SNORA72.6-201ENST00000384520 129 ntBASIC2.41□□□□□ -2.02
MSX1P28360 SNORD41-201ENST00000386967 70 ntBASIC2.41□□□□□ -2.02
MSX1P28360 RNA5SP82-201ENST00000516707 92 ntBASIC2.41□□□□□ -2.02
MSX1P28360 MIR3192-201ENST00000584920 77 ntBASIC2.41□□□□□ -2.02
MSX1P28360 AP000942.3-201ENST00000603702 160 ntBASIC2.41□□□□□ -2.02
MSX1P28360 AC067747.1-201ENST00000608026 250 ntBASIC2.41□□□□□ -2.02
MSX1P28360 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
MSX1P28360 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
MSX1P28360 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
MSX1P28360 MIRLET7A1-201ENST00000362295 80 ntBASIC2.4□□□□□ -2.03
MSX1P28360 RNU6-686P-201ENST00000364839 107 ntBASIC2.4□□□□□ -2.03
MSX1P28360 MIR513A1-201ENST00000385138 129 ntBASIC2.4□□□□□ -2.03
MSX1P28360 MIR1302-7-201ENST00000408841 72 ntBASIC2.4□□□□□ -2.03
MSX1P28360 RNU6-380P-201ENST00000410207 107 ntBASIC2.4□□□□□ -2.03
MSX1P28360 Z98742.3-201ENST00000418637 326 ntBASIC2.4□□□□□ -2.03
MSX1P28360 BX276092.1-201ENST00000427368 251 ntBASIC2.4□□□□□ -2.03
MSX1P28360 AL096861.1-201ENST00000610899 123 ntBASIC2.4□□□□□ -2.03
MSX1P28360 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.4□□□□□ -2.03
MSX1P28360 MIR6740-201ENST00000618268 113 ntBASIC2.4□□□□□ -2.03
MSX1P28360 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSX1P28360 AC008163.1-202ENST00000636004 2889 ntBASIC2.39□□□□□ -2.03
MSX1P28360 MIR30D-201ENST00000362283 70 ntBASIC2.39□□□□□ -2.03
MSX1P28360 SNORA3A-201ENST00000364113 130 ntBASIC2.39□□□□□ -2.03
MSX1P28360 AC004223.1-201ENST00000479840 271 ntBASIC2.39□□□□□ -2.03
MSX1P28360 RNU1-41P-201ENST00000516161 162 ntBASIC2.39□□□□□ -2.03
MSX1P28360 RNU1-48P-201ENST00000516400 162 ntBASIC2.39□□□□□ -2.03
MSX1P28360 RNA5SP148-201ENST00000516527 94 ntBASIC2.39□□□□□ -2.03
MSX1P28360 MIR5092-201ENST00000583139 88 ntBASIC2.39□□□□□ -2.03
MSX1P28360 MIR4264-201ENST00000583520 66 ntBASIC2.39□□□□□ -2.03
MSX1P28360 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
MSX1P28360 RNU6-811P-201ENST00000384069 107 ntBASIC2.38□□□□□ -2.03
MSX1P28360 SNORA67.4-201ENST00000384688 142 ntBASIC2.38□□□□□ -2.03
MSX1P28360 AC005908.1-201ENST00000468701 347 ntBASIC2.38□□□□□ -2.03
MSX1P28360 AC023790.1-201ENST00000482174 347 ntBASIC2.38□□□□□ -2.03
MSX1P28360 AC114801.3-201ENST00000510231 177 ntBASIC2.38□□□□□ -2.03
MSX1P28360 Y_RNA.660-201ENST00000516002 120 ntBASIC2.38□□□□□ -2.03
MSX1P28360 RNU6-523P-201ENST00000516304 54 ntBASIC2.38□□□□□ -2.03
MSX1P28360 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
MSX1P28360 RNU7-193P-201ENST00000516723 65 ntBASIC2.38□□□□□ -2.03
MSX1P28360 AC121758.2-201ENST00000553271 193 ntBASIC2.38□□□□□ -2.03
MSX1P28360 MIR4536-1-201ENST00000583537 88 ntBASIC2.38□□□□□ -2.03
MSX1P28360 AL357312.1-201ENST00000603879 298 ntBASIC2.38□□□□□ -2.03
MSX1P28360 Y_RNA.788-201ENST00000622394 112 ntBASIC2.38□□□□□ -2.03
MSX1P28360 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
MSX1P28360 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
MSX1P28360 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
MSX1P28360 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
MSX1P28360 SNORD36A-201ENST00000362874 73 ntBASIC2.37□□□□□ -2.03
MSX1P28360 RNU6-1165P-201ENST00000410119 107 ntBASIC2.37□□□□□ -2.03
MSX1P28360 JTBP1-201ENST00000441314 247 ntBASIC2.37□□□□□ -2.03
MSX1P28360 FGF7P7-201ENST00000514120 227 ntBASIC2.37□□□□□ -2.03
MSX1P28360 RNU6-237P-201ENST00000515985 71 ntBASIC2.37□□□□□ -2.03
MSX1P28360 RNU6-922P-201ENST00000516753 99 ntBASIC2.37□□□□□ -2.03
MSX1P28360 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.37□□□□□ -2.03
MSX1P28360 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
MSX1P28360 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
MSX1P28360 AC131280.1-202ENST00000624067 4211 ntBASIC2.37□□□□□ -2.03
MSX1P28360 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.36□□□□□ -2.03
MSX1P28360 RNU6-1254P-201ENST00000391266 104 ntBASIC2.36□□□□□ -2.03
MSX1P28360 SNORA31.11-201ENST00000516528 139 ntBASIC2.36□□□□□ -2.03
MSX1P28360 SNORD53-201ENST00000579969 78 ntBASIC2.36□□□□□ -2.03
MSX1P28360 MIR4524B-201ENST00000581569 115 ntBASIC2.36□□□□□ -2.03
MSX1P28360 RNU6-161P-201ENST00000363051 106 ntBASIC2.35□□□□□ -2.03
MSX1P28360 U8.2-201ENST00000363156 134 ntBASIC2.35□□□□□ -2.03
MSX1P28360 SNORA25.9-201ENST00000365087 128 ntBASIC2.35□□□□□ -2.03
MSX1P28360 RNU1-52P-201ENST00000384190 164 ntBASIC2.35□□□□□ -2.03
MSX1P28360 MIR516A2-201ENST00000384888 90 ntBASIC2.35□□□□□ -2.03
MSX1P28360 MIR516A1-201ENST00000385033 90 ntBASIC2.35□□□□□ -2.03
MSX1P28360 MT-TN-201ENST00000387400 73 ntBASIC2.35□□□□□ -2.03
MSX1P28360 HSPE1P24-201ENST00000450782 238 ntBASIC2.35□□□□□ -2.03
MSX1P28360 snoU13.26-201ENST00000459452 105 ntBASIC2.35□□□□□ -2.03
MSX1P28360 MIR4769-201ENST00000584126 77 ntBASIC2.35□□□□□ -2.03
MSX1P28360 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms