Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 AC139887.4-201ENST00000607877 719 ntBASIC21.67■■□□□ 1.06
DDX41Q9UJV9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX41Q9UJV9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 KRT8P11-201ENST00000409686 1436 ntBASIC21.66■■□□□ 1.06
DDX41Q9UJV9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.66■■□□□ 1.06
DDX41Q9UJV9 AC063952.2-201ENST00000498792 1227 ntBASIC21.66■■□□□ 1.06
DDX41Q9UJV9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX41Q9UJV9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX41Q9UJV9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
DDX41Q9UJV9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
DDX41Q9UJV9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
DDX41Q9UJV9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.64■■□□□ 1.06
DDX41Q9UJV9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 AC141257.4-201ENST00000634557 245 ntBASIC21.64■■□□□ 1.05
DDX41Q9UJV9 AC136944.6-201ENST00000634818 245 ntBASIC21.64■■□□□ 1.05
DDX41Q9UJV9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 AC104417.2-201ENST00000562989 1793 ntBASIC21.64■■□□□ 1.05
DDX41Q9UJV9 AC020916.1-201ENST00000587762 1774 ntBASIC21.64■■□□□ 1.05
DDX41Q9UJV9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX41Q9UJV9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX41Q9UJV9 AC022616.7-201ENST00000525383 220 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms